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41 changes: 40 additions & 1 deletion transfers/waterlevels_transfer.py
Original file line number Diff line number Diff line change
Expand Up @@ -41,6 +41,7 @@
filter_by_valid_measuring_agency,
lexicon_mapper,
get_transfers_data_path,
replace_nans,
)

# constants
Expand Down Expand Up @@ -94,6 +95,7 @@ def __init__(self, *args, **kw):

def _get_dfs(self) -> tuple[pd.DataFrame, pd.DataFrame]:
input_df = read_csv(self.source_table, dtype={"MeasuredBy": str})
input_df = replace_nans(input_df)
cleaned_df = filter_to_valid_point_ids(input_df)
cleaned_df = filter_by_valid_measuring_agency(cleaned_df)
logger.info(
Expand Down Expand Up @@ -314,11 +316,48 @@ def _make_observation(
if dq_raw and pd.notna(dq_raw):
dq_code = str(dq_raw).strip()
try:
data_quality = lexicon_mapper.map_value(f"LU_DataQuality:{dq_code}")
mapped_quality = lexicon_mapper.map_value(f"LU_DataQuality:{dq_code}")
if pd.isna(mapped_quality):
logger.warning(
"%sMapped DataQuality '%s' to NaN for WaterLevels record %s; "
"storing NULL to satisfy FK",
SPACE_6,
dq_code,
row.GlobalID,
)
self._capture_error(
row.PointID,
f"Mapped DataQuality '{dq_code}' to NaN; stored NULL",
"DataQuality",
)
data_quality = None
else:
mapped_quality_text = str(mapped_quality).strip()
if mapped_quality_text and mapped_quality_text.lower() != "nan":
data_quality = mapped_quality_text
else:
logger.warning(
"%sMapped DataQuality '%s' to empty value for WaterLevels "
"record %s; storing NULL to satisfy FK",
SPACE_6,
dq_code,
row.GlobalID,
)
self._capture_error(
row.PointID,
f"Mapped DataQuality '{dq_code}' to empty value; stored NULL",
"DataQuality",
)
data_quality = None
except KeyError:
logger.warning(
f"{SPACE_6}Unknown DataQuality code '{dq_code}' for WaterLevels record {row.GlobalID}"
)
self._capture_error(
row.PointID,
f"Unknown DataQuality code '{dq_code}'",
"DataQuality",
)

# TODO: after sensors have been added to the database update sensor_id (or sensor) for waterlevels that come from db sensors (like e probes?)
observation = Observation(
Expand Down
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