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FarahhhFatima/README.md

I'm Farah Fatima:

-Biotechnology student.
-Learning Python for Bioinformatics.
-Exploring genomics, data analysis & computational biology.
-Working with NCBI, BLAST & sequence analysis tools.
-Strong foundation in molecular biology & genetics.
-Building projects and growing every day.

🌐 Connect with me:

LinkedIn email

πŸ’» Tech Stack:

Python R Bash Script C++ C Java C C++ Google Cloud AWS Azure FastAPI Flask Streamlit Anaconda Nginx Gunicorn Postgres SQLite Git GitHub GitHub Actions GitLab Figma Canva Adobe Illustrator Adobe Photoshop Pandas NumPy Scipy Matplotlib scikit-learn Plotly PyTorch Docker Swagger Postman OpenAPI Specification

πŸ› οΈ Core Bioinformatics Skills:

  • Sequence Analysis: Reading FASTA/FASTQ files, FASTA/FASTQ processing, GC content calculation, sequence length, motif finding, DNA/RNA/protein sequence manipulation
  • Next-Generation Sequencing (NGS): FastQC, Trimmomatic, Cutadapt, read alignment (BWA, Bowtie2, HISAT2), variant calling (SAMtools, GATK), RNA-seq analysis (DESeq2, edgeR), differential expression
  • Genome & Transcriptome: Genome assembly (SPAdes, Canu), genome annotation (Prokka, MAKER), isoform analysis
  • Structural Bioinformatics: Protein structure visualization (PyMOL, Chimera), molecular docking
  • Functional Genomics & Pathways: Gene Ontology (GO), KEGG, Reactome, enrichment analysis
  • Metagenomics / Microbiome: QIIME2, Kraken, MetaPhlAn, alpha/beta diversity analysis
  • Single-cell / Advanced Transcriptomics: Seurat, Scanpy, cell clustering, pseudotime trajectory analysis
  • Databases & Resources: NCBI, GenBank, Ensembl, UCSC Genome Browser, UniProt, PDB, ClinVar, gnomAD
  • Workflow & Pipelines: Snakemake, Nextflow, Docker, Conda environments, HPC/Cluster computing (SLURM, PBS)
  • Programming & Scripting for Bioinformatics: Python (Biopython), R (Bioconductor), Bash/Shell scripting, Jupyter notebooks
  • Data Analysis & Visualization: pandas, numpy, matplotlib, seaborn, ggplot2, data summaries and plotting
  • Version Control & Collaboration: Git, GitHub, Pull Requests, open-source contributions, documentation, code reviews

πŸ“Š GitHub Stats:



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