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Bootstrap HeartBioPortal DataHub#2

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kasravnd merged 1 commit intomainfrom
codex/bootstrap-heartbioportal-datahub-repository
Jun 4, 2025
Merged

Bootstrap HeartBioPortal DataHub#2
kasravnd merged 1 commit intomainfrom
codex/bootstrap-heartbioportal-datahub-repository

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@kasravnd kasravnd commented Jun 4, 2025

Summary

  • organize directories for datasets, schemas, scripts, docs and CI
  • add README and CONTRIBUTING guides
  • implement metadata schema and example dataset
  • provide validation scripts and GitHub Actions workflow
  • set up MkDocs configuration and issue templates
  • license repository under CC BY 4.0
  • replace binary VCF example with plain text version

Testing

  • python scripts/validate_metadata.py public/example_fh_vcf (fails: ModuleNotFoundError: No module named 'jsonschema')

Codex couldn't run certain commands due to environnment limitations. Consider configuring a setup script or internet access in your Codex environment to install dependencies.


https://chatgpt.com/codex/tasks/task_e_683f997f03c883289e18d323f4d06910

@kasravnd kasravnd merged commit 9a24a6a into main Jun 4, 2025
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@kasravnd kasravnd deleted the codex/bootstrap-heartbioportal-datahub-repository branch February 15, 2026 16:23
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