Skip to content

Flip image to match other layers #21

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
Bisaloo wants to merge 2 commits into from
Closed

Flip image to match other layers #21

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
bef6c5f
Flip image to match other layers
Bisaloo May 6, 2026
75157af
Make sure shape use same coords as image
Bisaloo May 6, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion R/plotFrame.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -82,7 +82,7 @@ NULL
list(
do.call(geom_sf, c(list(data=df, mapping=aes), c(dot))),
theme(legend.key.size=unit(0.5, "lines")),
coord_sf(expand=FALSE, reverse="y"))
coord_sf(expand=FALSE))
}
#' @export
#' @rdname plotFrame
Expand Down
6 changes: 6 additions & 0 deletions R/plotImage.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -163,6 +163,12 @@ NULL
a <- .get_multiscale_data(x, k)
a <- a[.ch_idx(x, ch),,,drop=FALSE]
a <- .norm_ia(a, data_type(x))
# We later use `annotation_raster()`, which plots the array the same way it is printed,
# i.e., with the row 1 at the top, which doesn't match the rest of the ecosystem,
# so we mirror the image horizontally.
# FIXME: at some point, we would like to use `SpatialData::mirror()` directly in the
# `plotImage()` for this but it's currently not lazy and super slow.
a <- a[, rev(seq_len(dim(a)[2])), , drop=FALSE]
a <- .prep_ia(a, c, cl)
}

Expand Down
Loading