Write utilities for SpatialData #163
Draft
Annotations
33 warnings
|
Complete job
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@v3, actions/checkout@v3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
|
|
Run CMD check
Undocumented arguments in Rd file 'SpatialDataArray.Rd'
|
|
Run CMD check
Undocumented S4 methods:
|
|
Run CMD check
'::' or ':::' import not declared from: ‘arrow’
|
|
Install dependencies pass 2
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 2
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install dependencies pass 1
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/books/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/workflows/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/data/experiment/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/data/annotation/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Set BiocVersion
unable to access index for repository https://bioconductor.org/packages/3.24/bioc/bin/macosx/sonoma-arm64/contrib/4.7:
|
|
Install macOS system dependencies
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
|
|
Install macOS system dependencies
harfbuzz 14.2.0 is already installed and up-to-date.
To reinstall 14.2.0, run:
brew reinstall harfbuzz
|
|
Query dependencies
unable to access index for repository https://cran.rstudio.com/bin/macosx/sonoma-arm64/contrib/4.7:
|
background
wait
wait-all
cancel
Loading