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New version#659

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arrjon merged 58 commits intomainfrom
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Feb 24, 2026
Merged

New version#659
arrjon merged 58 commits intomainfrom
develop

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@arrjon arrjon commented Feb 24, 2026

This pull request makes significant improvements to the project's development workflow, CI/CD configuration, and developer tooling. The main focus is on modernizing and simplifying the continuous integration setup, enhancing the pre-commit hooks, and improving installation scripts for better reliability and maintainability. There are also minor documentation and packaging updates.

@arrjon arrjon requested a review from stephanmg February 24, 2026 15:20
@arrjon arrjon self-assigned this Feb 24, 2026
# Conflicts:
#	pyabc/external/r/r_rpy2.py
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codecov-commenter commented Feb 24, 2026

⚠️ Please install the 'codecov app svg image' to ensure uploads and comments are reliably processed by Codecov.

Codecov Report

❌ Patch coverage is 82.73616% with 159 lines in your changes missing coverage. Please review.
✅ Project coverage is 79.93%. Comparing base (95159ef) to head (85d2f2f).

Files with missing lines Patch % Lines
pyabc/visserver/server_dash.py 0.00% 37 Missing ⚠️
pyabc/sampler/redis_eps/cli.py 43.47% 11 Missing and 2 partials ⚠️
pyabc/sge/job_info_redis.py 0.00% 12 Missing ⚠️
pyabc/sge/db.py 25.00% 9 Missing ⚠️
pyabc/sge/sge.py 41.66% 6 Missing and 1 partial ⚠️
pyabc/petab/base.py 60.00% 4 Missing and 2 partials ⚠️
pyabc/visualization/data.py 57.14% 6 Missing ⚠️
pyabc/distance/pnorm.py 81.81% 4 Missing ⚠️
pyabc/storage/history.py 91.30% 2 Missing and 2 partials ⚠️
pyabc/visserver/server_flask.py 84.61% 4 Missing ⚠️
... and 37 more
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Additional details and impacted files
@@            Coverage Diff             @@
##             main     #659      +/-   ##
==========================================
- Coverage   80.60%   79.93%   -0.67%     
==========================================
  Files         141      141              
  Lines        8533     8325     -208     
  Branches        0     1110    +1110     
==========================================
- Hits         6878     6655     -223     
+ Misses       1655     1298     -357     
- Partials        0      372     +372     
Flag Coverage Δ
base 59.42% <66.73%> (?)
external-R 36.68% <52.60%> (?)
external-other-simulators 35.44% <50.97%> (?)
migrate 25.35% <44.84%> (?)
petab 35.44% <51.30%> (?)
visualization 52.68% <65.32%> (?)

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Looks good, thanks again for the great contribution.

@arrjon arrjon merged commit f6e230e into main Feb 24, 2026
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3 participants