Prior inspect peaks work#124
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feat: Add random Fourier dropout filter
…b-Berkeley#122) Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 2 to 3. - [Release notes](https://github.com/softprops/action-gh-release/releases) - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md) - [Commits](softprops/action-gh-release@v2...v3) --- updated-dependencies: - dependency-name: softprops/action-gh-release dependency-version: '3' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5 to 6. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v5...v6) --- updated-dependencies: - dependency-name: actions/setup-python dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
…dickerson95/jd_patch_refine_pos
Bumps [actions/checkout](https://github.com/actions/checkout) from 5 to 6. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@v5...v6) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
Added comment to clarify the symmetry parameter in the configuration file and the gpu_ids setting.
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 5 to 6. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](codecov/codecov-action@v5...v6) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-version: '6' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
* feat: Add option to apply global filtering before particle extraction * fix: re-normalize cropped images based on relative size * Apply suggestions from code review Renames items in docstring without any functionality change Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * refactored so global and local is now fully that, no mixed filtering * Update particle stack tests * feat: Can now refine from movie + def field * fix pylint errors * feat: differentiable refine added * differentiable refine working for motion polishing * refactor and changes from code review * fix linting errors * fix pylint 3.10 error * fix: bug when nothing provided * fix: patch error in constrained from particle stack changes * refactor util.py * fix linting errors * feat: modify p-value to match 2025 paper * feat: add aberrations to ctf * feat: aniso mag stretches projections (not jsut ctf freqs) * Update for fourier-slice api change * fix linting error * fix: refine runs if no values for aberrations in df * bodge fix: clamp particle stack out of bounds * Fix for changes in torch-fourier-slice * Refactor from code review * fix: prevent zeros being put in results everywhere * Can use particle shifts directly to get particle stacks from movie * Allow movie refine and global filtering * feat: movie refine from particle shifts directly * ignore pylint errors * update tests * Update ctf_utils.py from code review * change transform_matrix name * Update backend based on code review * fix: allow noe values in new columns * Update pyproject.toml update torch-fourier-filter required version * fix: ignore internal PyTorch compile warning * fix: proper filter warning * fix: resolve failing test (read-only array) for newer pandas version * fix: Put back deleted code from merge * address copilot suggestions --------- Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> Co-authored-by: jdickerson95 <jdickerson@mrc-lmb.cam.ac.uk> Co-authored-by: jdickerson95 <jdickerson@berkeley.edu>
…b-Berkeley#122) Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 2 to 3. - [Release notes](https://github.com/softprops/action-gh-release/releases) - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md) - [Commits](softprops/action-gh-release@v2...v3) --- updated-dependencies: - dependency-name: softprops/action-gh-release dependency-version: '3' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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@mgiammar I've implemented the inspect peaks, including frc and frame correlations. |
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