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Test tutorial#373

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cjmyers merged 2 commits into
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test_tutorial
Jun 13, 2026
Merged

Test tutorial#373
cjmyers merged 2 commits into
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test_tutorial

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@Gonza10V

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@Gonza10V Gonza10V requested a review from cjmyers June 13, 2026 06:27

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💡 Codex Review

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P2 Badge Align Study references with the added sample designs

When a user follows the tutorial with the filled workbooks added here, the Study workbook resolves sample!F through the hidden SBH_sampledesigns_collection, but those entries are Ecosc2_m9, Ecosc2_m9_IPTG, etc. while MD5_SampleDesign_filled.xlsm creates IDs like ecosc2_in_m9 and ecosc2_in_m9_with_iptg. That makes the Study upload link to the hard-coded dryrun_sampledesigns objects instead of the sample designs the user just uploaded, so the tutorial data are not self-consistent.


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P2 Badge Align SampleDesign references with the added strain ID

When the tutorial is run with the newly added Strain and SampleDesign workbooks, MD5_Strain_filled.xlsm creates the strain ID ecolisc2, but MD5_SampleDesign_filled.xlsm references Ecolisc2 in SBH_strains_collection and in the sample-design rows. Because those values are used as SBH lookup keys/URI display IDs, the sample-design upload will point at a different hard-coded strain URI rather than the strain produced by the supplied workbook.

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@cjmyers cjmyers merged commit ea9b2b2 into master Jun 13, 2026
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