Clearer error when using singular models#157
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mahendra-mariadassou merged 1 commit intoPLN-team:masterfrom Nov 3, 2025
Merged
Clearer error when using singular models#157mahendra-mariadassou merged 1 commit intoPLN-team:masterfrom
mahendra-mariadassou merged 1 commit intoPLN-team:masterfrom
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In this commit 1. Use singular.ok=FALSE in lm.fit(log(Y) ~ X) which causes a traceable R error 2. Update documentation. 3. Write tests.
mahendra-mariadassou
approved these changes
Nov 3, 2025
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This MR proposes to solve #156 by improving error message.
I propose to use$M M^\top$
lm.fit(log(Y) ~ X, singular.ok=FALSE)incompute_PLN_starting_point. This causes a traceable R error instead of an error in the C++ optimization routine when trying to invertI also wrote two tests for singular model matrix with continuous and discrete covariates. I only updated the documentation of
compute_PLN_starting_point.