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[pre-commit.ci] pre-commit autoupdate #689

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16442dd
[pre-commit.ci] pre-commit autoupdate
pre-commit-ci[bot] Jun 15, 2026
b7b104c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jun 15, 2026
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4 changes: 2 additions & 2 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -35,7 +35,7 @@ repos:
exclude: examples/solve-on-remote.ipynb

- repo: https://github.com/snakemake/snakefmt
rev: v0.11.3
rev: v2.0.1
hooks:
- id: snakefmt

Expand All @@ -47,7 +47,7 @@ repos:
# - black==23.12.1

- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.15.0 # Check for the latest version
rev: v0.15.17 # Check for the latest version
hooks:
- id: ruff
args: ["--config=pyproject.toml", "--fix"]
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6 changes: 3 additions & 3 deletions workflow/Snakefile
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Expand Up @@ -250,14 +250,14 @@ rule data_model:
# snakemake --rulegraph all | sed -n "/digraph/,\$p" | dot -Tpng -o repo_data/dag.jpg
# snakemake --dag -F | sed -n "/digraph/,\$p" | dot -Tpng -o repo_data/dag.jpg
rule dag:
message:
"Creating DAG of workflow."
output:
dot="repo_data/dag.dot",
jpg="repo_data/dag.jpg",
message:
"Creating DAG of workflow."
shell:
"""
snakemake --rulegraph all | sed -n "/digraph/,\$p" > {output.dot}
snakemake --rulegraph all | sed -n "/digraph/,\$p" >{output.dot}
dot -Tjpg -o {output.jpg} {output.dot}
"""

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