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  1. StageBridge StageBridge Public

    Transformer-based modeling of lung adenocarcinoma stage progression from spatial transcriptomics, single-cell RNA-seq, and whole-exome sequencing

    Python

  2. ras_csc_feedback_switch ras_csc_feedback_switch Public

    Systems Biology Hypothesis Model: A Ras-Driven Cancer Stem Cell–Microenvironment Circuit Provides a Mechanistic Basis for Malignant State Stability

    Jupyter Notebook

  3. luad-limitcycle-landscape-flux luad-limitcycle-landscape-flux Public

    Systems Biology Discovery Project: Discovery-Based Modeling of the Cell-Cycle Landscape and Flux in Lung Adenocarcinomas

    Jupyter Notebook