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Fix .bed input path handling and reference_data paths#1373

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gaow merged 3 commits into
StatFunGen:mainfrom
al4225:main
Jun 23, 2026
Merged

Fix .bed input path handling and reference_data paths#1373
gaow merged 3 commits into
StatFunGen:mainfrom
al4225:main

Remove spurious input/ prefix from descriptive text in gene_annotatio…

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failed Jun 23, 2026 in 5s