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Connectome Graph Phase 1 (Avenue 5 from research memo)#128

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Connectome Graph Phase 1 (Avenue 5 from research memo)#128
TSchonleber wants to merge 1 commit into
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research-connectome-phase-1

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Summary

Operationalizes Avenue 5 from the research-avenues memo (PR #125). First-class graph representation of inter-subsystem communication.

Seeded with the known topology walked from existing code + design proposals: 22 nodes (16 subsystems + 3 tables + 1 dial + 2 event_buses) and 18 edges (across writes_to / reads_from / modulates / gates / depends_on / broadcasts_to).

Top-degree hub: bg_modulators with 5 connections. Matches biological intuition — the neuromod dial cluster is the central integrator.

What's in

  • Migration 073 — 2 tables, 22+18 seed rows.
  • 5 MCP toolsstatus, node_get, register_node, register_edge, neighbors (BFS).
  • 11 tests, all green.

What's NOT in

  • No path-finding / cycle-detection (Phase 2).
  • No runtime auto-update of last_observed_at (Phase 3).

🤖 Generated with Claude Code

First-class representation of the inter-subsystem communication graph.
Walked existing code + proposals for seed edges. Operationalizes
Avenue 5 from research/autonomous-research-avenues-2026-05-20.md.

- Migration 073: connectome_nodes (22 seeded) + connectome_edges (18
  seeded). Top-degree hub bg_modulators with 5 connections — matches
  biological intuition.
- mcp_tools_connectome: 5 tools (status, node_get, register_node,
  register_edge, neighbors with BFS).
- 11 tests.

Phase 2 adds path-finding + cycle detection. Phase 3 auto-updates
from runtime observations.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
@TSchonleber
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Superseded by #138 (brainctl-consolidation-v2), which already merged this work into main as part of the v2 tool surface consolidation. Closing as redundant.

@TSchonleber TSchonleber deleted the research-connectome-phase-1 branch May 21, 2026 08:15
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