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feature: enforce PEP8 standard

ci-cd

refactor

Status: Open.

#22 In UKHD-NP/proteopy;

· idf-io opened on Jan 5, 2026

ANOVA

essentialEssential feature or code required for MS proteomics analysis.Essential feature or code required for MS proteomics analysis.

Status: Open.

Feature

#20 In UKHD-NP/proteopy;

· idf-io opened on Jan 5, 2026

feature/aggregate_peptide_groups?/check and warn if log transformed data

Status: Open.

#18 In UKHD-NP/proteopy;

· idf-io opened on Oct 27, 2025

feature/pl.proteoform_scores/arg: log_x=False

Status: Open.

#16 In UKHD-NP/proteopy;

· idf-io opened on Oct 24, 2025

Differential proteoform analysis (traditional, based on quantities)

Status: Open.

#15 In UKHD-NP/proteopy;

· idf-io opened on Oct 24, 2025

feature/peptide_level/summarize_overlapping_peptides

Status: Open.

#14 In UKHD-NP/proteopy;

· idf-io opened on Oct 24, 2025

intermediate level reader function: from precursor tabular file extract relevant information

Status: Open.

#12 In UKHD-NP/proteopy;

· idf-io opened on Sep 10, 2025

per batch correlation

Status: Open.

#11 In UKHD-NP/proteopy;

· ibludau opened on Sep 9, 2025

Aesthetic: pl.peptide_intensities(), remove box around plot. Only keep axis lines

Status: Open.

#10 In UKHD-NP/proteopy;

· idf-io opened on Sep 5, 2025

Bug correction: pl.peptide_intensities(log_transform)

Status: Open.

#9 In UKHD-NP/proteopy;

· idf-io opened on Sep 5, 2025

Aligned peptide summarization function

Status: Open.

#7 In UKHD-NP/proteopy;

· idf-io opened on Sep 4, 2025

Feature summary function (focus on zeros and missing values)

Status: Open.

#6 In UKHD-NP/proteopy;

· idf-io opened on Sep 4, 2025