feat(doseResponseFit): Add progress bar

[tonywu1999]

Summary by CodeRabbit

• New Features

  • Added progress bar feedback during protein processing in the doseResponseFit function for improved user visibility.

• Bug Fixes

  • Corrected field name reference in documentation.

• Chores

  • Updated package dependencies to include development and testing tools.

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[coderabbitai]

📝 Walkthrough

Walkthrough

This PR adds progress bar functionality to the doseResponseFit function for user feedback during protein processing. Dependencies are expanded in both Imports and Suggests sections, with corresponding NAMESPACE entries added. A variable name reference in documentation is also corrected.

Changes

Cohort / File(s)	Summary
Package Configuration DESCRIPTION, NAMESPACE	Added utils to Imports; expanded Suggests with tidyverse, boot, purrr, gridExtra, knitr, rmarkdown, BiocStyle, testthat. Added importFrom entries for setTxtProgressBar and txtProgressBar utilities.
Core Functionality R/Fit_Isotonic_Regression.R	Integrated progress bar display in doseResponseFit protein processing loop using txtProgressBar and setTxtProgressBar for user feedback.
Documentation man/doseResponseFit.Rd	Corrected variable name in example from adjust_pval to adj.pvalue in filtering condition.

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~20 minutes

Poem

🐰 A progress bar hops into view,
Dependencies gathered, both old and new,
Variables fixed with a careful glance,
Users will smile at each loop's advance!
Thump thump! — the changes are done with flair ✨

🚥 Pre-merge checks | ✅ 3

✅ Passed checks (3 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title accurately describes the main change: adding a progress bar to doseResponseFit function. It is concise, specific, and directly reflects the primary modification evident in the changeset.
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.

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