Update CZIcmd usage documentation for clarity

[ptahmose]

Description

Reformatted the CZIcmd usage instructions to improve readability and consistency. Updated the code-block directive from bash to console for better context. Enhanced alignment, spacing, and formatting of command descriptions and examples. Ensured the help text matches the updated format. No functional changes were made; updates are limited to documentation and presentation.

The distorted page is this.
The issue is that in reStructuredText, the content of a .. code-block:: directive must be:

1. Separated from the directive by a blank line
2. Indented relative to the directive - which was not the case

Type of change

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
• This change requires a documentation update

How Has This Been Tested?

no code changes

Checklist:

• I followed the Contributing Guidelines.
• I did a self-review.
• I commented my code, particularly in hard-to-understand areas.
• I updated the documentation.
• I updated the version of libCZI following Versioning of libCZI depending on the type of change
  • Bug fix -> PATCH
  • New feature -> MINOR
  • Breaking change -> MAJOR
• I have added tests that prove my fix is effective or that my feature works.
• New and existing unit tests pass locally with my changes.

[Copilot]

Pull request overview

This PR fixes reStructuredText formatting issues in the CZIcmd usage documentation. The primary change addresses malformed code-block directive syntax by adding proper indentation and a blank line separator, which was causing rendering problems on the documentation website. The directive type was also updated from bash to console for better semantic accuracy.

Key changes:

• Fixed .. code-block:: directive formatting with proper blank line and indentation
• Changed code-block type from bash to console
• Reformatted all command-line help text with consistent 4-space indentation

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[Copilot]

Pull request overview

Copilot reviewed 1 out of 1 changed files in this pull request and generated 2 comments.

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 66.38%. Comparing base (da3d7dc) to head (f857e57).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #160   +/-   ##
=======================================
  Coverage   66.38%   66.38%           
=======================================
  Files          96       96           
  Lines       12365    12365           
=======================================
  Hits         8209     8209           
  Misses       4156     4156           

Flag	Coverage Δ
windows-latest	66.38% <ø> (ø)

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[m-aXimilian]

The two remaining Copilot suggestions seem legitimate to me.
Other than that LGTM.

[m-aXimilian]

LGTM

[Copilot]

Pull request overview

Copilot reviewed 2 out of 2 changed files in this pull request and generated 7 comments.

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[Copilot]

Pull request overview

Copilot reviewed 2 out of 2 changed files in this pull request and generated no new comments.

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