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Causal Inference Experimentation

Example Running

./run_model.sh -m mean_difference -p src/MeanDifference.py

Notes

  • causalbench subrepo is present for reference. There is no need to run git submodule init
  • the folders output, storage, and manual_data are reserved.
  • this will not run immediately - there is a nontrivial amount of editing to the pip installed causalbench files that is required to run this, specifically,

Custom model list

  • mean_difference, src/MeanDifference.py
  • random, src/RandomModel.py
  • mean_difference, src/DataSaverModel.py
    • This model saves the expression data to the manual_data folder

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Experimenting with causal GRN inference methods

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