v0.4.0

Major changes

• Improve coverage of test suite for future integration of additional code.
• Designate methods to "research-grade" if methods are neither fully tested or maintained.
• Integrate a first example in Jupyterbook as a collection of usage examples.
• Improve Cython integration by reducing the number of external dependencies.
• Develop Github wiki pages to log developer notes in terms of packaging, Cythonizing, and major dependency intricacies.

What's Changed

• Build distributions action by @jared321 in #165
• Update 161CoverageFix by @jared321 in #168
• Measure coverage on all files by @jared321 in #162
• Updating 166Branch for correct coverage reports by @mosesyhc in #169
• Set two calibration methods as research grade by @jared321 in #174
• Designate LMC sampler as research grade by @jared321 in #175
• Update Juptyer book branch by @jared321 in #176
• Integrate basic examples Jupyterbook by @jared321 in #171
• Remove useless badge by @jared321 in #177
• Updating Branch 166ExpandTestSuite by @mosesyhc in #178
• Set PCGPR to research grade emulator by @jared321 in #180
• Bringing 166TestExpansion up to date with shelved methods by @mosesyhc in #181
• Expand test suite to include supported sampler coverage by @mosesyhc in #173
• 167v0.4 versioning - Update bibentry in citation and CHANGELOG by @mosesyhc in #183

Full Changelog: v0.3.1...v0.4.0

v0.3.0

Release 0.3.0

Date: September 12, 2024

• Tested in Python 3.9, 3.10, 3.11, 3.12, on Linux, macOS, and Windows.
• Functionality:
  • Include tox developer integration.
  • Include save/load functions for emulator and calibrator.
  • Include empirical coverage calculations in calibrator.
  • Modify covx()-returned object to improve usability.
  • Modify object repr to improve user feedback.
  • Update test suite to improve testing, including bookending versions and testing of major methods.
• Documentation:
  • Update documentation to emphasize introductory materials and usage tutorials.
  • Update scientific usage references.
  • Update README to include collaborator and contributor list.

What's Changed

• Bringing develop back up to date by @wildsm in #94
• include optional dependencies in pyproject.toml dynamic field by @mosesyhc in #98
• Update pyproject.toml by @wildsm in #99
• Update README.rst by @wildsm in #95
• Consolidating setup info by @mosesyhc in #101
• updating ptmc-removal branch of setup configurations by @mosesyhc in #103
• Removal of PTMC (depends on ptemcee for which maintenance has been dropped) by @mosesyhc in #104
• remove py38 from workflow by @mosesyhc in #113
• Tox integration & use in GitHub actions by @jared321 in #107
• catchup with Develop by @mosesyhc in #116
• Documentation updates by @mosesyhc in #111
• py312 failures with distutil import by @mosesyhc in #127
• User interface improvements by @mosesyhc in #118
• Update test suite by @mosesyhc in #120
• Catch up update_test_suite branch by @mosesyhc in #132
• Update test suite by @mosesyhc in #134
• Bookend tests with latest & oldest Python dependencies by @jared321 in #135
• reverting the autolocating x by @mosesyhc in #138
• clarify saveload functions in emulator and calibrator and check type by @mosesyhc in #136
• V0.3 update by @mosesyhc in #121
• SDK and contact updates by @mosesyhc in #140
• update publish action to fix bug for pypa/cibuildwheel<2.16.5 by @mosesyhc in #141
• patch os runner version by @mosesyhc in #142

New Contributors

• @jared321 made their first contribution in #107

Full Changelog: v0.2.1...v0.3.0

v0.2.1

Release 0.2.1

Date: September 26, 2023

• Updates README to improve installation and testing procedures
• Updates Github action to build and upload .whl distribution files to PyPI.
• Fixes testing procedure to ensure shell script searches under sys.path for pytest.

What's Changed

• author names by @ozgesurer in #86
• Bringing develop up to date with main by @mosesyhc in #87
• PR for installation-related changes by @mosesyhc in #90

Full Changelog: v0.2.0...v0.2.1

v0.2.0

Release 0.2.0

Date: September 18, 2023

• Emulation methods:
  • Rename PCGPwMatComp to PCGPwImpute.
  • Include a new emulation method indGP.
  • Include a new emulation method PCGPR, which requires scikit-learn.
  • Include a new emulation method PCSK.
  • Include a new emulation method nuclear-ROSE, for integration with Python package nuclear-rose.
  • Remove GPy from the list of emulation methods.
• Calibration methods:
  • Modify directbayes to admit Python package ptemcee as sampler.
• Utilities methods:
  • Modify metropolis_hastings to allow control of console output.
  • Include a new sampling method PTLMC.
  • Include a new sampling method PTMC, using Python package ptemcee.
• Test suite:
  • Remove the use of python setup.py test for unit testing.

What's Changed (Auto-generated log)

• GPy, PCGPwM modifications by @mosesyhc in #23
• Major update to PCGPwM, PCGPwImpute (formerly PCGPwMatComp) by @mosesyhc in #25
• Developsk by @danOSU in #30
• Update surmisebandsdk.md by @wildsm in #32
• put the kwargs in the right format to be used by ptemcee by @danOSU in #31
• Plumlee patch py version by @MattPlumlee in #35
• fixing broken link under branch main rename by @mosesyhc in #36
• SDKv0.2 by @ozgesurer in #38
• Update .yml trigger branch name, fix flake8 by @mosesyhc in #40
• updates and additions to emulation methods: PCGPwM, colGP (column independent GP) by @mosesyhc in #37
• Update requirements.txt to handle sklearn install error by @mosesyhc in #45
• Fix test by @mosesyhc in #50
• Bringing develop up to date by @wildsm in #49
• ROSE integration currently handled by surmise by @mosesyhc in #47
• Develop rose by @mosesyhc in #57
• Develop rose by @mosesyhc in #58
• rename colGP to indGP by @mosesyhc in #62
• Remove GPy and references, update author list by @mosesyhc in #59
• PCSK check before merge by @mosesyhc in #63
• Update LICENSE by @wildsm in #67
• Warnings to be shown unless deliberately ignored by @mosesyhc in #70
• Create spelling_action.yml by @wildsm in #69
• Reviewing SDK compliance on mandatory printing by @mosesyhc in #71
• Sphinx update requirement and include references by @mosesyhc in #68
• Add back windows and macos into github actions by @mosesyhc in #72
• changelog update for removal of setup.py test by @mosesyhc in #77
• Replacing all surmising by @wildsm in #78
• Catching some lingering masters by @wildsm in #79
• adding user input emulator variance for nuclear-ROSE by @mosesyhc in #75
• surmise v0.2 staging by @mosesyhc in #53
• Update CHANGELOG.rst by @wildsm in #83

New Contributors

• @danOSU made their first contribution in #30
• @wildsm made their first contribution in #32

Full Changelog: v0.1.1...v0.2.0

v0.1.1

Release v0.1.1

Include a new emulation method PCGPwM.py integrated with Cython (see surmise\emulationmethods).
Include a new emulation method PCGPwMatComp.py (see surmise\emulationmethods).
Include a new calibration method simulationpost.py (see surmise\calibrationmethods).
Include a new calibration method mlbayeswoodbury.py (see surmise\calibrationmethods).
Include a new sampling method PTLMC.py (see surmise\utilitiesmethods).
Update GPy.py to handle high-dimensional data and allow nan values (see surmise\emulationmethods).
Examples are updated to illustrate the new methods (see \examples).
Documentation is improved to provide a developer guide (see docs\contributing.rst).

v0.1.0

• Initial release.