HALO: Hierarchical Causal Modeling for Single Cell Multi-Omics Data arXiv BibTeX Official code for the paper [HALO: Hierarchical Causal Modeling for Single Cell Multi-Omics Data ] Please cite us when making use of our code or ideas. Installation cd $PROJECT_DIR conda config --set channel_priority flexible conda env create -f environment.yml -n halo-env conda activate halo-env The Pretrained models and datasets Models Datasets Tutorial Notebook 1. the training tutorial: train_tutorial.ipynb 2. the representation analysis tutorial: tutorial_1_representation.ipynb 3. the gene-peak level analysis tutorial: tutorial_2_gene_peaks.ipynb 4. the granger causal analysis tutorial: tutorial_3_granger.ipynb 5. the chromatin potential tutorial: tutorial_3_Chromatin.ipynb 6. the optimal transport analysis tutorial: tutorial_3_Chromatin.ipynb License Attribution-NonCommercial-NoDerivatives 4.0 International BibTex
