Completion of the transition to a pure JSON-based system

[danprudky]

1. Apply CR changes from Replace protobuf with JSON #19
2. Completely remove Protobuf

[coderabbitai]

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[sonarqubecloud]

Quality Gate passed

Issues
6 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud