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Pcdc dev #42

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Merged
grugna merged 3 commits into from
Apr 30, 2025
Merged

Pcdc dev #42

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4f26378
cde_id to code, and cde_version to version
grugna Apr 30, 2025
f15dd5a
revert
grugna Apr 30, 2025
fd5555a
Merge pull request #41 from chicagopcdc/fix_terminology
grugna Apr 30, 2025
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4 changes: 2 additions & 2 deletions dictionaryutils/utils.py
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Original file line number Diff line number Diff line change
Expand Up @@ -45,13 +45,13 @@ def node_values_to_codes(data_dictionary_node, record_value, ontology):
print("ERROR: Missing enumDef in data dictionary for value: " + value + "in variable: " + variable + " - - Returning not coded value")
return_value.append((variable,value))
continue
values = [ definition for definition in data_dictionary_node["properties"][variable]["enumDef"] if definition["enumeration"] == value and "termDef" in definition and "source" in definition["termDef"] and definition["termDef"]["source"] == ontology and definition["termDef"]["cde_id"] ]
values = [ definition for definition in data_dictionary_node["properties"][variable]["enumDef"] if definition["enumeration"] == value and "termDef" in definition and "source" in definition["termDef"] and definition["termDef"]["source"] == ontology and definition["termDef"]["code"] ]

if len(values) > 1 or len(values) == 0:
print("ERROR: Expected only one value per ontology per value - - Returning not coded value")
return_value.append((variable,value))
continue

return_value.append((variable,values[0]["termDef"]["cde_id"]))
return_value.append((variable,values[0]["termDef"]["code"]))

return return_value
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