style: apply biome 2.x safe autofixes across the repo by coderdan · Pull Request #518 · cipherstash/stack

coderdan · 2026-06-17T03:26:38Z

Follow-up to #517 (the config migration). Stacked on chore/biome-2-config — review/merge that first; this retargets to main once it lands.

What

With biome.json parsing again under biome 2.x, ran biome check --write to clear the backlog of auto-fixable findings that were invisible while the config was broken. Safe fixes only — --unsafe was not used.

310 files fixed; errors 345 → 8
Changes are formatting reflow + safe lint fixes (e.g. import sorting). Representative diff is whitespace/layout (e.g. it.each([...]) reflow) with identical behavior.
No bare side-effect imports (import 'x') were reordered (verified) — so no import-ordering side-effect risk.

Blast radius

296 files (278 .ts, 14 .json, 4 .mjs):

area	files	area	files
prisma-next	87	wizard	17
stack	61	drizzle	8
cli	47	scripts	6
examples	29	bench	6
protect	28	(other)	7

Verification

This is mechanical, but verified as far as the local env allows (no DB/credentials here):

CLI (47 files reformatted) — pnpm test → 312 passed
scripts (6 .mjs) — self-tests 20 passed, plus lint:runners and lint:workflow-cache (the CI lint scripts) pass
wizard / schema / protect-dynamodb — unit tests pass
stack / protect / drizzle / prisma-next — their failing suites are pre-existing DB-integration tests (Missing env.DATABASE_URL, searchable-json-pg) that fail identically on the base branch; not affected by this change
Only safe fixes applied, so behavior is preserved by construction

Out of scope (follow-up)

After this, biome still reports 8 errors + 394 warnings + 81 infos that are not safe-autofixable — these need manual review (and/or a reviewed biome check --write --unsafe pass). Left for a separate change so this PR stays purely mechanical.

Notes

biome is not run in CI, so none of this gates the pipeline today; it restores a clean baseline for local code:fix.
Expect a conflict with feat(cli): guard against missing native binaries #516 in packages/cli/src/bin/stash.ts (that PR rewrites the file). Whichever merges second should rebase; the cleanup here is formatting-only.

changeset-bot · 2026-06-17T03:26:44Z

⚠️ No Changeset found

Latest commit: 8a365b2

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coderabbitai · 2026-06-17T03:26:46Z

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📥 Commits

Reviewing files that changed from the base of the PR and between 8ab3368 and 8a365b2.

📒 Files selected for processing (300)

e2e/tests/package-managers.e2e.test.ts
e2e/tests/prisma-example-readme.e2e.test.ts
e2e/tests/supply-chain.e2e.test.ts
e2e/wasm/roundtrip.test.ts
examples/basic/index.ts
examples/basic/src/encryption/index.ts
examples/basic/src/lib/supabase/encrypted.ts
examples/basic/src/lib/supabase/server.ts
examples/basic/src/queries/contacts.ts
examples/prisma/migrations/app/20260513T1735_initial/end-contract.d.ts
examples/prisma/migrations/app/20260513T1735_initial/end-contract.json
examples/prisma/migrations/app/20260513T1735_initial/migration.json
examples/prisma/migrations/app/20260513T1735_initial/migration.ts
examples/prisma/migrations/app/20260513T1735_initial/ops.json
examples/prisma/migrations/cipherstash/20260601T0000_install_eql_bundle/contract.json
examples/prisma/migrations/cipherstash/20260601T0000_install_eql_bundle/migration.json
examples/prisma/migrations/cipherstash/20260601T0000_install_eql_bundle/ops.json
examples/prisma/migrations/cipherstash/contract.d.ts
examples/prisma/migrations/cipherstash/contract.json
examples/prisma/migrations/cipherstash/refs/head.json
examples/prisma/prisma-next.config.ts
examples/prisma/src/prisma/contract.d.ts
examples/prisma/src/prisma/contract.json
examples/prisma/test/e2e/bigint.e2e.test.ts
examples/prisma/test/e2e/bool.e2e.test.ts
examples/prisma/test/e2e/date.e2e.test.ts
examples/prisma/test/e2e/global-setup.ts
examples/prisma/test/e2e/harness.ts
examples/prisma/test/e2e/json.e2e.test.ts
examples/prisma/test/e2e/mixed.e2e.test.ts
examples/prisma/test/e2e/num.e2e.test.ts
examples/prisma/test/e2e/str-range.e2e.test.ts
examples/prisma/test/e2e/vitest.config.ts
packages/bench/__tests__/db-only.test.ts
packages/bench/__tests__/drizzle/operators.explain.test.ts
packages/bench/__tests__/harness.test.ts
packages/bench/src/cli/setup.ts
packages/bench/src/drizzle/setup.ts
packages/bench/src/harness/seed.ts
packages/cli/src/__tests__/database-url.test.ts
packages/cli/src/__tests__/native.test.ts
packages/cli/src/__tests__/supabase-migration.test.ts
packages/cli/src/commands/auth/login.ts
packages/cli/src/commands/db/activate.ts
packages/cli/src/commands/db/install.ts
packages/cli/src/commands/db/push.ts
packages/cli/src/commands/db/rewrite-migrations.ts
packages/cli/src/commands/db/status.ts
packages/cli/src/commands/db/supabase-migration.ts
packages/cli/src/commands/db/test-connection.ts
packages/cli/src/commands/db/upgrade.ts
packages/cli/src/commands/db/validate.ts
packages/cli/src/commands/doctor/index.ts
packages/cli/src/commands/encrypt/backfill.ts
packages/cli/src/commands/encrypt/context.ts
packages/cli/src/commands/encrypt/cutover.ts
packages/cli/src/commands/encrypt/drop.ts
packages/cli/src/commands/encrypt/lib/db-readers.ts
packages/cli/src/commands/encrypt/plan.ts
packages/cli/src/commands/encrypt/status.ts
packages/cli/src/commands/impl/__tests__/how-to-proceed.test.ts
packages/cli/src/commands/impl/index.ts
packages/cli/src/commands/impl/steps/handoff-wizard.ts
packages/cli/src/commands/impl/steps/how-to-proceed.ts
packages/cli/src/commands/index.ts
packages/cli/src/commands/init/__tests__/utils.test.ts
packages/cli/src/commands/init/detect-agents.ts
packages/cli/src/commands/init/lib/__tests__/install-skills.test.ts
packages/cli/src/commands/init/lib/__tests__/parse-plan.test.ts
packages/cli/src/commands/init/lib/__tests__/rollout-state.test.ts
packages/cli/src/commands/init/lib/__tests__/setup-prompt.test.ts
packages/cli/src/commands/init/lib/build-agents-md.ts
packages/cli/src/commands/init/lib/handoff-helpers.ts
packages/cli/src/commands/init/lib/rollout-state.ts
packages/cli/src/commands/init/lib/setup-prompt.ts
packages/cli/src/commands/init/lib/write-context.ts
packages/cli/src/commands/init/providers/__tests__/base.test.ts
packages/cli/src/commands/init/providers/__tests__/supabase.test.ts
packages/cli/src/commands/init/steps/authenticate.ts
packages/cli/src/commands/plan/index.ts
packages/cli/src/commands/status/__tests__/status.test.ts
packages/cli/src/commands/status/index.ts
packages/cli/src/commands/status/render.ts
packages/cli/src/config/database-url.ts
packages/cli/src/index.ts
packages/cli/src/installer/index.ts
packages/cli/src/native.ts
packages/cli/tests/e2e/runner-aware-help.e2e.test.ts
packages/cli/tsconfig.json
packages/drizzle/__tests__/drizzle.test.ts
packages/drizzle/__tests__/operators-jsonb.test.ts
packages/drizzle/__tests__/operators.test.ts
packages/drizzle/src/bin/generate-eql-migration.ts
packages/drizzle/src/bin/runner.ts
packages/drizzle/src/pg/index.ts
packages/drizzle/src/pg/operators.ts
packages/drizzle/src/pg/schema-extraction.ts
packages/migrate/src/backfill.ts
packages/migrate/src/index.ts
packages/prisma-next/migrations/20260601T0000_install_eql_bundle/end-contract.d.ts
packages/prisma-next/migrations/20260601T0000_install_eql_bundle/migration.json
packages/prisma-next/migrations/20260601T0000_install_eql_bundle/migration.ts
packages/prisma-next/migrations/20260601T0000_install_eql_bundle/ops.json
packages/prisma-next/src/contract-authoring.ts
packages/prisma-next/src/contract.d.ts
packages/prisma-next/src/contract.json
packages/prisma-next/src/execution/abort.ts
packages/prisma-next/src/execution/cell-codec-factory.ts
packages/prisma-next/src/execution/codec-runtime.ts
packages/prisma-next/src/execution/decrypt-all.ts
packages/prisma-next/src/execution/envelope-base.ts
packages/prisma-next/src/execution/envelope-bigint.ts
packages/prisma-next/src/execution/envelope-boolean.ts
packages/prisma-next/src/execution/envelope-date.ts
packages/prisma-next/src/execution/envelope-double.ts
packages/prisma-next/src/execution/envelope-json.ts
packages/prisma-next/src/execution/envelope-string.ts
packages/prisma-next/src/execution/helpers.ts
packages/prisma-next/src/execution/middleware-registry.ts
packages/prisma-next/src/execution/operators.ts
packages/prisma-next/src/execution/parameterized.ts
packages/prisma-next/src/execution/routing.ts
packages/prisma-next/src/execution/sdk.ts
packages/prisma-next/src/exports/codec-types.ts
packages/prisma-next/src/exports/column-types.ts
packages/prisma-next/src/exports/contract-space-typing.ts
packages/prisma-next/src/exports/control.ts
packages/prisma-next/src/exports/middleware.ts
packages/prisma-next/src/exports/migration.ts
packages/prisma-next/src/exports/operation-types.ts
packages/prisma-next/src/exports/pack.ts
packages/prisma-next/src/exports/runtime.ts
packages/prisma-next/src/extension-metadata/codec-metadata.ts
packages/prisma-next/src/extension-metadata/constants.ts
packages/prisma-next/src/extension-metadata/descriptor-meta.ts
packages/prisma-next/src/middleware/bulk-encrypt.ts
packages/prisma-next/src/migration/call-classes.ts
packages/prisma-next/src/migration/cipherstash-codec.ts
packages/prisma-next/src/migration/codec-hooks-factory.ts
packages/prisma-next/src/migration/eql-bundle.ts
packages/prisma-next/src/migration/eql-install.generated.ts
packages/prisma-next/src/stack/derive-schemas.ts
packages/prisma-next/src/stack/from-stack.ts
packages/prisma-next/src/stack/sdk-adapter.ts
packages/prisma-next/src/types/codec-types.ts
packages/prisma-next/src/types/operation-types.ts
packages/prisma-next/test/abort.test.ts
packages/prisma-next/test/authoring.test.ts
packages/prisma-next/test/bulk-encrypt-middleware.test.ts
packages/prisma-next/test/bundling-isolation.test.ts
packages/prisma-next/test/call-classes.test.ts
packages/prisma-next/test/call-classes.types.test-d.ts
packages/prisma-next/test/cipherstash-codec-numeric.test.ts
packages/prisma-next/test/cipherstash-codec-other-codecs.test.ts
packages/prisma-next/test/cipherstash-codec-string.test.ts
packages/prisma-next/test/cipherstash-codec.test.ts
packages/prisma-next/test/codec-runtime.test.ts
packages/prisma-next/test/column-types.test.ts
packages/prisma-next/test/decrypt-all.test.ts
packages/prisma-next/test/derive-schemas.test.ts
packages/prisma-next/test/descriptor.test.ts
packages/prisma-next/test/envelope-bigint.test.ts
packages/prisma-next/test/envelope-boolean.test.ts
packages/prisma-next/test/envelope-date.test.ts
packages/prisma-next/test/envelope-double.test.ts
packages/prisma-next/test/envelope-json.test.ts
packages/prisma-next/test/envelope-string.test.ts
packages/prisma-next/test/envelope.types.test-d.ts
packages/prisma-next/test/equality-trait-removal.test.ts
packages/prisma-next/test/from-stack-divergence.test.ts
packages/prisma-next/test/helpers.test.ts
packages/prisma-next/test/helpers.types.test-d.ts
packages/prisma-next/test/operation-types.types.test-d.ts
packages/prisma-next/test/operator-lowering-equality.test.ts
packages/prisma-next/test/operator-lowering-order-range.test.ts
packages/prisma-next/test/operator-lowering-text-search.test.ts
packages/prisma-next/test/operator-lowering.helpers.ts
packages/prisma-next/test/operator-lowering.test.ts
packages/prisma-next/test/psl-interpretation-numeric.test.ts
packages/prisma-next/test/psl-interpretation-other-types.test.ts
packages/prisma-next/test/psl-interpretation.test.ts
packages/prisma-next/test/routing.test.ts
packages/prisma-next/test/runtime-descriptor.test.ts
packages/prisma-next/test/sdk-adapter.test.ts
packages/prisma-next/test/sdk.types.test-d.ts
packages/prisma-next/vitest.config.ts
packages/protect-dynamodb/__tests__/error-codes.test.ts
packages/protect-dynamodb/src/operations/search-terms.ts
packages/protect/__tests__/deprecated/search-terms.test.ts
packages/protect/__tests__/encrypt-query-searchable-json.test.ts
packages/protect/__tests__/encrypt-query-stevec.test.ts
packages/protect/__tests__/error-codes.test.ts
packages/protect/__tests__/keysets.test.ts
packages/protect/__tests__/number-protect.test.ts
packages/protect/__tests__/supabase.test.ts
packages/protect/src/bin/runner.ts
packages/protect/src/bin/stash.ts
packages/protect/src/client.ts
packages/protect/src/ffi/index.ts
packages/protect/src/ffi/model-helpers.ts
packages/protect/src/ffi/operations/batch-encrypt-query.ts
packages/protect/src/ffi/operations/bulk-decrypt-models.ts
packages/protect/src/ffi/operations/bulk-decrypt.ts
packages/protect/src/ffi/operations/bulk-encrypt-models.ts
packages/protect/src/ffi/operations/bulk-encrypt.ts
packages/protect/src/ffi/operations/decrypt-model.ts
packages/protect/src/ffi/operations/decrypt.ts
packages/protect/src/ffi/operations/deprecated/search-terms.ts
packages/protect/src/ffi/operations/encrypt-model.ts
packages/protect/src/ffi/operations/encrypt-query.ts
packages/protect/src/ffi/operations/encrypt.ts
packages/protect/src/helpers/index.ts
packages/protect/src/identify/index.ts
packages/protect/src/index.ts
packages/protect/src/stash/index.ts
packages/protect/src/types.ts
packages/stack/__tests__/audit.test.ts
packages/stack/__tests__/backward-compat.test.ts
packages/stack/__tests__/basic-protect.test.ts
packages/stack/__tests__/bulk-protect.test.ts
packages/stack/__tests__/cjs-require.test.ts
packages/stack/__tests__/drizzle-operators-jsonb.test.ts
packages/stack/__tests__/encrypt-query-searchable-json.test.ts
packages/stack/__tests__/encrypt-query-stevec.test.ts
packages/stack/__tests__/encrypt-query.test.ts
packages/stack/__tests__/error-codes.test.ts
packages/stack/__tests__/error-helpers.test.ts
packages/stack/__tests__/fixtures/index.ts
packages/stack/__tests__/helpers.test.ts
packages/stack/__tests__/infer-index-type.test.ts
packages/stack/__tests__/json-protect.test.ts
packages/stack/__tests__/jsonb-helpers.test.ts
packages/stack/__tests__/keysets.test.ts
packages/stack/__tests__/lock-context.test.ts
packages/stack/__tests__/nested-models.test.ts
packages/stack/__tests__/null-guards.test.ts
packages/stack/__tests__/number-protect.test.ts
packages/stack/__tests__/protect-ops.test.ts
packages/stack/__tests__/schema-builders.test.ts
packages/stack/__tests__/searchable-json-pg.test.ts
packages/stack/__tests__/supabase.test.ts
packages/stack/__tests__/types.test-d.ts
packages/stack/src/client.ts
packages/stack/src/drizzle/index.ts
packages/stack/src/drizzle/operators.ts
packages/stack/src/drizzle/schema-extraction.ts
packages/stack/src/dynamodb/helpers.ts
packages/stack/src/dynamodb/index.ts
packages/stack/src/dynamodb/operations/bulk-decrypt-models.ts
packages/stack/src/dynamodb/operations/bulk-encrypt-models.ts
packages/stack/src/dynamodb/operations/decrypt-model.ts
packages/stack/src/dynamodb/operations/encrypt-model.ts
packages/stack/src/dynamodb/types.ts
packages/stack/src/encryption/helpers/index.ts
packages/stack/src/encryption/helpers/infer-index-type.ts
packages/stack/src/encryption/helpers/model-helpers.ts
packages/stack/src/encryption/helpers/validation.ts
packages/stack/src/encryption/index.ts
packages/stack/src/encryption/operations/base-operation.ts
packages/stack/src/encryption/operations/batch-encrypt-query.ts
packages/stack/src/encryption/operations/bulk-decrypt-models.ts
packages/stack/src/encryption/operations/bulk-decrypt.ts
packages/stack/src/encryption/operations/bulk-encrypt-models.ts
packages/stack/src/encryption/operations/bulk-encrypt.ts
packages/stack/src/encryption/operations/decrypt-model.ts
packages/stack/src/encryption/operations/decrypt.ts
packages/stack/src/encryption/operations/encrypt-model.ts
packages/stack/src/encryption/operations/encrypt-query.ts
packages/stack/src/encryption/operations/encrypt.ts
packages/stack/src/identity/index.ts
packages/stack/src/index.ts
packages/stack/src/schema/index.ts
packages/stack/src/supabase/index.ts
packages/stack/src/supabase/query-builder.ts
packages/stack/src/supabase/types.ts
packages/stack/src/types-public.ts
packages/stack/src/types.ts
packages/stack/src/wasm-inline.ts
packages/wizard/src/__tests__/agent-sdk.test.ts
packages/wizard/src/__tests__/commandments.test.ts
packages/wizard/src/__tests__/detect.test.ts
packages/wizard/src/__tests__/format.test.ts
packages/wizard/src/__tests__/gateway-messages.test.ts
packages/wizard/src/__tests__/health-checks.test.ts
packages/wizard/src/__tests__/hooks.test.ts
packages/wizard/src/__tests__/interface.test.ts
packages/wizard/src/__tests__/prerequisites.test.ts
packages/wizard/src/__tests__/wizard-tools.test.ts
packages/wizard/src/health-checks/index.ts
packages/wizard/src/lib/gather.ts
packages/wizard/src/lib/rewrite-migrations.ts
packages/wizard/src/lib/wire-call-sites.ts
packages/wizard/src/run.ts
packages/wizard/src/tools/wizard-tools.ts
packages/wizard/tsconfig.json
scripts/__tests__/fixtures/allowed-fallback.ts
scripts/__tests__/fixtures/identifier.ts
scripts/__tests__/lint-no-hardcoded-runners.test.mjs
scripts/__tests__/lint-no-workflow-caching.test.mjs
scripts/lint-no-hardcoded-runners.mjs

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Now that biome.json parses under biome 2.x (#517), run `biome check --write` to clear the backlog of auto-fixable findings that were invisible while the config was unparseable. Safe fixes only — formatting reflow plus safe lint fixes (import sorting, etc.). The 351 unsafe fixes and the remaining non-autofixable lint findings are intentionally left for manual follow-up. Mechanical change; no behavior change. Verified: CLI suite (312 tests) and script self-tests (20) pass; reformatted packages with credential-free unit tests pass; the remaining monorepo test failures are pre-existing DB-integration tests (Missing DATABASE_URL) that fail identically on the base branch.

… pass Formats 5 source files that landed on main after this branch was first written (wasm-inline, cli native/doctor, wasm e2e test). Pure biome 2.x safe-fix output, except: biome mangles the inline comment on WasmClientConfig's intersection type into nonsense prose, so that note is relocated into the object body where biome leaves it stable (idempotent).

coderdan · 2026-06-19T13:51:05Z

Rebase + behavior-change review

Rebased onto latest main (no conflicts — the anticipated stash.ts clash with #516 didn't materialize; git's 3-way merge handled it since the cleanup is formatting-only) and reviewed thoroughly to confirm no behavior changed. Verified four ways, strongest first:

1. Byte-for-byte reproduction (decisive)

Ran the repo's pinned biome check --write (safe only, no --unsafe) on a clean worktree of current main and compared file-by-file against the branch. All 296 touched files are byte-identical to biome's fresh output — so the diff contains only biome's mechanical safe-fix output, with no hand edits able to slip in.

2. Type-import safety under `verbatimModuleSyntax`

Most packages set verbatimModuleSyntax: true, under which a wrong import↔import type classification is a compile error. pnpm build across all 10 packages passed, including every DTS build — so the type-import changes (mostly merging import type {A} + import {b} → import { type A, b }) are correct and behavior-preserving.

3. Side-effect import ordering

Confirmed no bare/side-effect imports (import 'x') were reordered — the only way import sorting could change runtime behavior. Matches the PR description's claim.

4. Test parity

CLI suite (47 files reformatted, the largest chunk): 319 passed, green.

The substantive-looking hunks are all line-wrap reflow and standard safe lint fixes (useConst, useTemplate, import organizing) — behavior-preserving by construction.

Top-up

A fresh biome run on current main fixed 301 files vs this PR's original 296 — the 5 extra are files that landed on main after the branch was first written (e2e/wasm/roundtrip.test.ts, packages/cli/src/native.ts + its test, packages/cli/src/commands/doctor/index.ts, packages/stack/src/wasm-inline.ts). I formatted those too, so a fresh biome check --write now produces zero further changes to tracked source — a fully clean baseline.

One non-mechanical edit: biome mangles the inline comment on WasmClientConfig's intersection type into garbled prose, and re-mangles it in every position around the & (...) (a biome limitation with comments between & and a parenthesized union). Rather than commit nonsense, I relocated that note into the object body where biome leaves it stable (verified idempotent). It's comment-only — no behavior impact.

Post-top-up verification

Full-tree biome check: clean (only the expected files differ from base)
turbo build (stack + cli): green, incl. DTS/typecheck under verbatimModuleSyntax
CLI suite: 319 passed

Branch is rebased and mergeable pending review approval.

coderdan requested a review from a team as a code owner June 17, 2026 03:26

Base automatically changed from chore/biome-2-config to main June 17, 2026 04:44

coderdan force-pushed the chore/biome-format-cleanup branch from da3be8a to b793578 Compare June 17, 2026 04:46

coderdan requested a review from Copilot June 19, 2026 12:50

Copilot started reviewing on behalf of coderdan June 19, 2026 12:50 View session

Copilot AI reviewed Jun 19, 2026

coderdan added 2 commits June 19, 2026 23:39

coderdan force-pushed the chore/biome-format-cleanup branch from b793578 to 8a365b2 Compare June 19, 2026 13:50

coderdan merged commit df9c8e3 into main Jun 19, 2026
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coderdan deleted the chore/biome-format-cleanup branch June 19, 2026 13:52

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style: apply biome 2.x safe autofixes across the repo#518

style: apply biome 2.x safe autofixes across the repo#518
coderdan merged 2 commits into
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coderdan commented Jun 17, 2026

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coderdan commented Jun 17, 2026

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Verification

Out of scope (follow-up)

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coderdan commented Jun 19, 2026

Rebase + behavior-change review

1. Byte-for-byte reproduction (decisive)

2. Type-import safety under verbatimModuleSyntax

3. Side-effect import ordering

4. Test parity

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changeset-bot Bot commented Jun 17, 2026 •

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coderabbitai Bot commented Jun 17, 2026 •

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2. Type-import safety under `verbatimModuleSyntax`