Multiple Sequence Alignment Visualizer

Assess conservation of the hemoglobin subunit beta (HBB) gene across different species.

Features

Built with Flask: A web app for visualizing multiple sequence alignments using the Clustal Omega API
FASTA file upload: Allows users to submit sequence data for alignment
Phylogenetic tree viewer: Visualizes evolutionary relationships using D3.js
Conserved region detection: Uses a sliding window approach to identify optimal sequence region for HMM analysis

Live project link: https://project-cs123b.onrender.com
Tech stack: Flask, Python, Jinja, JavaScript, CSS, D3.js, Clustal Omega API, Render

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
assets		assets
static		static
templates		templates
.gitignore		.gitignore
HBB.py		HBB.py
Procfile		Procfile
README.md		README.md
app.py		app.py
favicon.ico		favicon.ico
requirements.txt		requirements.txt
runtime.txt		runtime.txt
utils.py		utils.py