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KeyError with create_splice_sites with database derived from GTF file

Status: Open.

#239 In daler/gffutils;

· kbseah opened on May 23, 2025

Value of Target attribute gains quotes when it shouldn't in round trip manipulation

feature request

Status: Open.

#230 In daler/gffutils;

· photocyte opened on Apr 5, 2024

merge_strategy='create_unique' not always creating unique id's

needs-discussion

Status: Open.

#214 In daler/gffutils;

· novigit opened on Apr 25, 2023

db.parents(id) stops at level 2?

Status: Open.

#204 In daler/gffutils;

· dariober opened on Jan 12, 2023

Map transcript coordinates to genome coordinates

feature request

Status: Open.

#203 In daler/gffutils;

· dariober opened on Jan 5, 2023

Support for fasta at end

Status: Open.

#127 In daler/gffutils;

· innovate-invent opened on Apr 26, 2019

spliced sequence extraction

feature request

Status: Open.

#103 In daler/gffutils;

· daler opened on Oct 11, 2017

improve gffwriter

feature request

Status: Open.

#89 In daler/gffutils;

· daler opened on Sep 21, 2016

Graph database?

discussion

Status: Open.

#35 In daler/gffutils;

· olgabot opened on May 10, 2014

Lightweight Gene class for gffutils

feature request

Status: Open.

#21 In daler/gffutils;

· yarden opened on May 19, 2013

remove orphans

feature request

Status: Open.

#6 In daler/gffutils;

· daler opened on Feb 25, 2013

Add adapter to convert to Bio.SeqRecord

feature request

Status: Open.

#3 In daler/gffutils;

· daler opened on Feb 21, 2013