Release 0.12.2 #249
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Release 0.12.2 #249
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Pull request overview
This PR updates BEDbase to version 0.12.2, introducing a reference genome validator feature and redesigning the home page. The changes include new backend endpoints for genome analysis, frontend components for displaying validation results, and a modernized home page with improved visual presentation and motion animations.
Changes:
- Added bed classifier and reference genome validator with new API endpoint
/bed/analyze-genome - Redesigned home page with improved layout, motion animations, and statistics display
- Updated dependencies including
@databio/gtars(0.5.3),bbconf(0.14.2), and addedbedboss(0.8.5)
Reviewed changes
Copilot reviewed 13 out of 16 changed files in this pull request and generated 5 comments.
Show a summary per file
| File | Description |
|---|---|
| bedhost/_version.py | Version bumped to 0.12.2 |
| bedhost/main.py | Initialized ReferenceValidator for genome analysis |
| bedhost/routers/bed_api.py | Added new /analyze-genome endpoint for genome validation |
| bedhost/data_models.py | Added ChromLengthUploadModel for genome data upload |
| ui/src/queries/useAnalyzeGenome.ts | New React Query hook for genome analysis |
| ui/src/pages/bed-analytics.tsx | Integrated genome analyzer with UI controls |
| ui/src/pages/home.tsx | Complete redesign with animations and improved layout |
| ui/src/contexts/mosaic-coordinator-context.tsx | Removed unused parameter from SQL query |
| ui/src/const.ts | Updated UMAP data source URL |
| ui/src/components/bed-analytics-components/chromosome-stats-panel.tsx | Added chromosome sorting and commented out chart |
| ui/package.json | Updated gtars dependency to 0.5.3 |
| requirements/requirements-all.txt | Updated bbconf and added bedboss dependencies |
| test.Dockerfile | Fixed config file path consistency |
| ui/public/* | Added and updated SVG icons |
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ui/src/components/bed-analytics-components/chromosome-stats-panel.tsx
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| Latest commit: |
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| Preview URL: | https://b003ec27.bedhost.pages.dev |
| Branch Preview URL: | https://bed-analyze.bedhost.pages.dev |
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Changes:
TODO:
__version__.pyfile