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the early version of orthofinder returns errors

Status: Open.

#1028 In davidemms/OrthoFinder;

· KVin1456 opened on Apr 15, 2026

ERROR in parallel process - after finish commands of genetrees and -fgt

Status: Open.

#1027 In davidemms/OrthoFinder;

· david6git opened on Apr 10, 2026

Mismatch between Orthogroups.tsv and WorkingDirectory/Trees_ids/*.txt for a small number of OGs by OrthoFinder v3.1.3

Status: Open.

#1026 In davidemms/OrthoFinder;

· BioOmics opened on Apr 10, 2026

Question about missing Gene_Trees output in OrthoFinder v3.1.1 for downstream ASTRAL analysis

Status: Open.

#1025 In davidemms/OrthoFinder;

· Huangxiaoqin666 opened on Apr 6, 2026

ERROR: Stalled for 200.0s

Status: Open.

#1024 In davidemms/OrthoFinder;

· lfaino opened on Apr 3, 2026

BLAST results not showing

Status: Open.

#1023 In davidemms/OrthoFinder;

· QGirasek opened on Mar 11, 2026

Error code: -9

Status: Open.

#1021 In davidemms/OrthoFinder;

· BWY9394 opened on Jan 20, 2026

Phylogenetic_Hierarchical_Orthogroups and Nx.tsv

Status: Open.

#1020 In davidemms/OrthoFinder;

· pfb2201 opened on Jan 8, 2026

OrthoFinder run does not produce N0.tsv file

Status: Open.

#1019 In davidemms/OrthoFinder;

· alexweisberg opened on Jan 8, 2026

Missing orthogroup .fa input files to famsa

Status: Open.

#1017 In davidemms/OrthoFinder;

· serenalotreck opened on Dec 2, 2025

Can i use orthofinder for a SUBSET of proteins?

Status: Open.

#1016 In davidemms/OrthoFinder;

· Alexkortsi opened on Nov 25, 2025

Consultation on OrthoFinder Batch Processing Strategy for 239 Species

Status: Open.

#1015 In davidemms/OrthoFinder;

· alex-per opened on Nov 7, 2025