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leshy wants to merge 49 commits intomainfrom
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Feat/auto config type#1750
leshy wants to merge 49 commits intomainfrom
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@leshy leshy commented Apr 5, 2026

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Dreamsorcerer and others added 30 commits March 13, 2026 01:02
* Reapply "Module config adjustments (#1413)" (#1417)

This reverts commit 3df8857.

* Fixes

* Move global_config

* Why did this not commit?

* Default

* Fix

* Fix

* Fix

* Docs

* tentative fix for timeout error

* Fix

* Use create_autospec

* TemporalMemory fix

* Forbid extra

* Fix

---------

Co-authored-by: Sam Bull <Sam.B@snowfalltravel.com>
Co-authored-by: Paul Nechifor <paul@nechifor.net>
* fix(imports): remove dunder init

* fix import
* fix(deps): skip pyrealsense2 on macOS (not available)

* -
* memory plans

* spec iteration

* spec iteration

* query objects spec

* mem3 iteration

* live/passive transforms

* initial pass on memory

* transform materialize

* sqlite schema: decomposed pose columns, separate payload table, R*Tree spatial index, lazy data loading

- Pose stored as 7 real columns (x/y/z + quaternion) instead of blob, enabling R*Tree spatial indexing
- Payload moved to separate {name}_payload table with lazy loading via _data_loader closure
- R*Tree virtual table created per stream for .near() bounding-box queries
- Added __iter__ to Stream for lazy iteration via fetch_pages
- Added embedding_stream() to Session ABC
- Updated _streams metadata with parent_stream and embedding_dim columns
- Codec module extracted (LcmCodec, PickleCodec, codec_for_type)
- Fixed broken memory_old.timeseries imports (memory.timeseries → memory_old.timeseries)
- Tests now use real Image data from TimedSensorReplay("unitree_go2_bigoffice/video")
- 32/32 tests passing, mypy clean

* JpegCodec for Image storage (43x smaller), ingest helpers, QualityWindowTransformer, E2E test

- Add JpegCodec as default codec for Image types (2.76MB → 64KB per frame)
- Preserve frame_id in JPEG header; ts stored in meta table
- Add ingest() helper for bulk-loading (ts, payload) iterables into streams
- Add QualityWindowTransformer: best-frame-per-window (supports backfill + live)
- EmbeddingTransformer sets output_type=Embedding automatically
- Require payload_type when creating new streams (no silent PickleCodec fallback)
- TransformStream.store() accepts payload_type, propagated through materialize_transform
- E2E test: 5min video → sharpness filter → CLIP embed → text search
- Move test_sqlite.py next to sqlite.py, update Image comparisons for lossy codec
- Add sqlite-vec dependency

* Wire parent_id lineage through transforms for automatic source data projection

- Add parent_id to Observation, append(), do_append(), and _META_COLS
- All transformers (PerItem, QualityWindow, Embedding) pass obs.id as parent_id
- SqliteEmbeddingBackend._row_to_obs() wires _source_data_loader via parent_id
- EmbeddingObservation.data now auto-projects to parent stream's payload (e.g. Image)
- No more timestamp-matching hacks to find source data from embedding results

* Wire parent_stream into _streams registry, add tasks.md gap analysis

- materialize_transform() now UPDATEs _streams.parent_stream so stream-level
  lineage is discoverable (prerequisite for .join())
- Fix mypy: narrow parent_table type in _source_loader closure
- Add plans/memory/tasks.md documenting all spec-vs-impl gaps

* Implement project_to() for cross-stream lineage projection

Adds LineageFilter that compiles to nested SQL subqueries walking the
parent_id chain. project_to(target) returns a chainable target Stream
using the same _with_filter mechanism as .after(), .near(), etc.

Also fixes _session propagation in search_embedding/search_text.

* Make search_embedding auto-project to source stream

EmbeddingStream is a semantic index — search results should be source
observations (Images), not Embedding objects. search_embedding now
auto-projects via project_to when lineage exists, falling back to
EmbeddingStream for standalone streams without parent lineage.

* CaptionTransformer + Florence2 batch fix

- Add CaptionTransformer: wraps Captioner/VlModel, uses caption_batch()
  for backfill efficiency, auto-creates TextStream with FTS on .store()
- Fix Florence2 caption_batch() emitting <pad> tokens (skip_special_tokens)
- E2E script now uses transform pipeline for captioning search results

* ObservationSet: fetch() returns list-like + stream-like result set

fetch() now returns ObservationSet instead of plain list, keeping you
in the Stream API. This enables fork-and-zip (one DB query, two uses)
and in-memory re-filtering without re-querying the database.

- Add matches(obs) to all filter dataclasses for in-Python evaluation
- Add ListBackend (in-memory StreamBackend) and ObservationSet class
- Filtered .appended reactive subscription via matches() infrastructure
- Update e2e export script to use fork-and-zip pattern
- 20 new tests (64 total, all passing)

* search_embedding accepts str/image with auto-embedding

EmbeddingStream now holds an optional model reference, so
search_embedding auto-dispatches: str → embed_text(), image → embed(),
Embedding/list[float] → use directly. The model is wired through
materialize_transform and also accepted via embedding_stream().

* Add sqlite_vec to mypy ignore list (no type stubs available)

* Fix mypy + pytest errors across memory and memory_old modules

- Fix SpatialImage/SpatialEntry dataclass hierarchy in memory_old
- Fix import path in memory_old/test_embedding.py
- Add None guard for obs.ts in run_viz_demo.py
- Add payload_type/session kwargs to base Stream.store() signature
- Type-annotate embeddings as EmbeddingStream in run_e2e_export.py
- Add similarity scores, raw search mode, pose ingest, viz pipeline

* Improve similarity heatmap with normalized values and distance spread

- Normalize similarity scores relative to min/max (CLIP clusters in narrow band)
- Add distance_transform_edt spread so dots radiate outward, fading to 0
- Bump default search k to 200 for denser heatmaps

* Remove plans/ from tracking (kept locally)

* Address Greptile review: SQL injection guards, distance ordering, stubs

- Validate stream names and tag keys as SQL identifiers
- Allowlist order_by fields to {id, ts}
- Re-sort vector search results by distance rank after IN-clause fetch
- Make TagsFilter hashable (tuple of pairs instead of dict)
- Remove dead code in memory_old/embedding.py
- Add scipy-stubs, fix distance_transform_edt type annotations

* Add memory Rerun visualization, fix stream iteration, update docs

- Add dimos/memory/rerun.py: to_rerun() sends stream data to Rerun
  with auto-derived entity paths and no wall-clock timeline contamination
- Fix Stream.fetch_pages() to respect limit_val (was always overridden
  by batch_size, making .limit() ineffective during iteration)
- Update viz.py: normalize similarities with 20% floor cutoff,
  sort timeline by timestamp, add log_top_images()
- Convert run_e2e_export.py to pytest with cached DB fixture
- Update plans/memory docs to match current implementation

* Rename run_e2e_export → test_e2e_export, delete viz.py + run_viz_demo, fix mypy

- Rename to test_e2e_export.py (it's a pytest file, not a standalone script)
- Fix Generator return type and type: ignore for mypy
- Delete viz.py (replaced by rerun.py) and run_viz_demo.py
- Update docs/api.md to reference rerun.py instead of viz.py

* added docs

* removed tasks.md

* Optimize memory pipeline: TurboJPEG codec, sharpness downsample, thread reduction

- Switch JpegCodec from cv2.imencode to TurboJPEG (2-5x faster encode/decode)
- Lower default JPEG quality from 90 to 50 for smaller storage footprint
- Downscale sharpness computation to 160px Laplacian variance (10-20x cheaper)
- Add MemoryModule with plain-Python sharpness windowing (no rx timer overhead)
- Limit OpenCV threads: 2 globally in worker entrypoint, 1 in MemoryModule
- Cap global rx ThreadPoolScheduler at 8 workers (was unbounded cpu_count)
- Refactor SqliteEmbeddingBackend/SqliteTextBackend to use _post_insert hook
- Encode payload before meta insert to prevent orphaned rows on codec error
- Add `dimos ps` CLI command and `dps` entrypoint for non-interactive process listing
- Add unitree-go2-memory blueprint

* text embedding transformer

* cleanup

* Use Codec protocol type instead of concrete union, remove dead _pose_codec

* correct db sessions

* record module cleanup

* memory elements are now Resource, simplification of memory Module

* Rename stream.appended to stream.observable()/subscribe()

Mirror the core In stream API — memory streams now expose
.observable() and .subscribe() instead of the .appended property.

* repr, embedding fetch simplification

* Make Observation generic: Observation[T] with full type safety

* Simplify Stream._clone with copy.copy, remove subclass overrides

* loader refactor

* Extract backend.load_data(), add stream.load_data(obs) public API

SQL now lives on the backend, closures are thin thread-guarded wrappers.

* Add rich colored __str__ to Stream and Filter types

print() now shows colored output (class=cyan, type=yellow, name=green,
filters=cyan, pipes=dim). __repr__ stays plain for logs.

* Unify __repr__ and __str__ via _rich_text().plain, remove duplicate rendering

* renamed types to type

* one -> first, time range

* getitem for streams

* readme sketch

* bigoffice db in lfs, sqlite accepts Path

* projection transformers

* stream info removed, stream accessor helper, TS unique per stream

* Add colored summary() output and model= param to search_embedding

summary() now renders the rich-text stream header with colored type info,
count, timestamps, and duration. search_embedding() accepts an optional
model= override so callers don't need to attach a model to the stream.

* stream delete

* florence model detail settings and prefix filter

* extracted formatting to a separate file

* extract rich text rendering to formatting.py, add Stream.name, fix stale tests

Move all _rich_text methods from type.py and stream.py into a central
formatting.py module with a single rich_text() dispatch function.
Replace relative imports with absolute imports across memory/.
Add Stream.name property, remove VLMDetectionTransformer tests, fix
stale test assertions.

* matching based on streams

* projection experiments

* projection bugfix

* observationset typing fix

* detections, cleanup

* mini adjustments

* transform chaining

* memory2: lazy pull-based stream system

Greenfield rewrite of the memory module using sync generators.
Every .filter(), .transform(), .map() returns a new Stream — no
computation until iteration. Backends handle query application;
transforms are Iterator[Obs] → Iterator[Obs]. Live mode with
backpressure buffers bridges push sources to pull consumers.

* memory2: fix typing — zero type:ignore, proper generics

- Closed → ClosedError (N818)
- Callable types for _loader, Disposable.fn, backend_factory, PredicateFilter.fn
- Disposable typed in stream._live_sub
- assert+narrowing instead of type:ignore in KeepLast.take, _iter_transform
- cast only in Session.stream (unavoidable generic cache lookup)

* memory2: fix .live() on transform streams — reject with clear error

Live items from the backend buffer were bypassing the transform chain
entirely. The fix: .live() is only valid on backend-backed streams;
transforms downstream just see an infinite iterator.

* memory2: replace custom Disposable with rxpy DisposableBase

Use reactivex.abc.DisposableBase in protocols and reactivex.disposable.Disposable
in implementations, consistent with dimos's existing Resource pattern.

* memory2: extract filters and StreamQuery from type.py into filter.py

type.py now only contains Observation and its helpers.

* memory2: store transform on Stream node, not as source tuple

Stream._source is now `Backend | Stream` instead of `Backend | tuple[Stream, Transformer]`.
The transformer lives on the stream that owns it (`_xf` field), not bundled into the
source pointer. Fix .map() tests to pass Observation→Observation lambdas. Remove live
mode tests (blocked by nvidia driver D-state in root conftest autoconf).

* memory2: move live logic from Stream into Backend via StreamQuery

Live is now just a query parameter (live_buffer on StreamQuery). Stream.live()
is a one-liner query modifier — the backend handles subscription, dedup, and
backpressure internally. Stream has zero live implementation.

* memory2: extract impl/ layer with MemoryStore and SqliteStore scaffold

Move ListBackend from backend.py into impl/memory.py alongside new
MemorySession and MemoryStore. Add SqliteStore/SqliteSession/SqliteBackend
skeleton in impl/sqlite.py. Refactor Store and Session to abstract base
classes with _create_backend() hook. backend.py now only contains the
Backend and LiveBackend protocols.

Also fix doclinks: disambiguate memory.py reference in transports docs,
and include source .md file path in all doclinks error messages.

* memory2: add buffer.py docstring and extract buffer tests to test_buffer.py

* memory2: add Codec protocol and grid test for store implementations

Introduce codecs/ package with the Codec[T] protocol (encode/decode).
Thread payload_type through Session._create_backend() so backends can
select the right codec.  Add test_impl.py grid test that runs the same
15 basic tests against every store backend (memory passes, sqlite xfail
until implemented).

* memory2: add codec implementations (pickle, lcm, jpeg) with grid tests

PickleCodec for arbitrary objects, LcmCodec for DimosMsg types,
JpegCodec for Image types with TurboJPEG. codec_for() auto-selects
based on payload type. Grid test verifies roundtrip preservation
across all three codecs using real PoseStamped and camera frame data.

* resource: add context manager to Resource; make Store/Session Resources

Resource.__enter__/__exit__ calls start()/stop(), giving every Resource
context-manager support. memory2 Store and Session now extend Resource
instead of bare ABC, replacing close() with the standard start()/stop()
lifecycle.

* resource: add CompositeResource with owned disposables

CompositeResource extends Resource with a _disposables list and own()
method. stop() disposes all children — gives tree-structured resources
automatic cleanup. Session and Store now extend CompositeResource.

* memory2: add BlobStore ABC with File and SQLite implementations

BlobStore separates payload blob storage from metadata indexing.
FileBlobStore stores on disk ({root}/{stream}/{key}.bin),
SqliteBlobStore uses per-stream tables. Grid tests cover both.

* memory2: move blobstore.md into blobstore/ as module readme

* memory2: add embedding layer, vector/text search, live safety guards

- EmbeddedObservation with derive() promotion semantics
- EmbedImages/EmbedText transformers using EmbeddingModel ABC
- .search(vec, k) and .search_text() on Stream with Embedding type
- VectorStore ABC for pluggable vector backends
- Backend.append() takes Observation directly (not kwargs)
- is_live() walks source chain; search/order_by/fetch/count guard
  against live streams with TypeError instead of silent hang
- .drain() terminal for constant-memory side-effect pipelines
- Rewrite test_stream.py to use Stream layer (no manual backends)

* memory2: add documentation for streaming model, codecs, and backends

- README.md: architecture overview, module index, quick start
- streaming.md: lazy vs materializing vs terminal evaluation model
- codecs/README.md: codec protocol, built-in codecs, writing new ones
- impl/README.md: backend guide with query contract and grid test setup

* query application refactor

* memory2: replace LiveBackend with pluggable LiveChannel, add Configurable pattern

- Replace LiveBackend protocol with LiveChannel ABC (SubjectChannel for
  in-memory fan-out, extensible to Redis/Postgres for cross-process)
- Add livechannel/ subpackage with SubjectChannel implementation
- Make Store and Session extend Configurable[ConfigT] with StoreConfig
  and SessionConfig dataclasses
- Remove redundant Session._backends dict (Backend lives in Stream._source)
- Make list_streams() and delete_stream() abstract on Session so
  implementations can query persisted streams
- StreamNamespace delegates to list_streams()/stream() instead of
  accessing _streams directly
- Remove LiveBackend isinstance guard from stream.py — all backends
  now have a built-in LiveChannel

* memory2: make backends Configurable, add session→stream config propagation

Session.stream() now merges session-level defaults with per-stream
overrides and forwards them to _create_backend(). Backends (ListBackend,
SqliteBackend) extend Configurable[BackendConfig] so they receive
live_channel, blob_store, and vector_store through the standard config
pattern instead of explicit constructor params.

* memory2: wire VectorStore into ListBackend, add MemoryVectorStore

ListBackend.append() now delegates embedding storage to the pluggable
VectorStore when configured. _iterate_snapshot() uses VectorStore.search()
for ANN ranking when available, falling back to brute-force in
StreamQuery.apply(). Adds MemoryVectorStore (in-memory brute-force impl)
and tests verifying end-to-end config propagation including per-stream
vector_store overrides.

* memory2: wire BlobStore into ListBackend with lazy/eager blob loading

Payloads are encoded via auto-selected codec and externalized to the
pluggable BlobStore on append. Observations become lightweight metadata
with lazy loaders that fetch+decode on first .data access. Per-stream
eager_blobs toggle pre-loads data during iteration.

* memory2: allow bare generator functions as stream transforms

stream.transform() now accepts Iterator→Iterator callables in
addition to Transformer subclasses, for quick stateful pipelines.

* memory2: update docs to reflect current API

- impl/README: LiveBackend → LiveChannel, add Configurable pattern,
  update _create_backend and Store/Session signatures
- embeddings.md: fix Observation fields (_source → _loader),
  embedding type (np.ndarray → Embedding), remove unimplemented
  source chain, use temporal join for lineage
- streaming.md: note .transform() accepts bare callables
- README: add FnIterTransformer, generator function example

* memory2: implement full SqliteBackend with vec0 vector search, JSONB tags, and SQL filter pushdown

- Add SqliteVectorStore using sqlite-vec vec0 virtual tables with cosine distance
- Implement SqliteBackend: append, iterate (snapshot/live/vector), count with SQL pushdown
- Add SQL filter compilation for time, tags, and range filters; Python fallback for NearFilter/PredicateFilter
- Wire SqliteSession with _streams registry table, codec persistence, shared store auto-wiring
- Support eager blob loading via co-located JOIN optimization
- Load sqlite-vec extension in SqliteStore with graceful fallback
- Remove xfail markers from test_impl.py — all 36 grid tests pass

* memory2: stream rows via cursor pagination instead of fetchall()

Add configurable page_size (default 256) to BackendConfig. SqliteBackend
now iterates the cursor with arraysize set to page_size for memory-efficient
streaming of large result sets.

* memory2: add lazy/eager blob tests and spy store delegation grid tests

- TestBlobLoading: verify lazy (_UNLOADED sentinel + loader) vs eager (JOIN inline)
  paths for SqliteBackend, plus value equivalence between both modes
- TestStoreDelegation: grid tests with SpyBlobStore/SpyVectorStore injected into
  both memory and sqlite backends — verify append→put, iterate→get, and search
  delegation through the pluggable store ABCs

* memory2: add R*Tree spatial index for NearFilter SQL pushdown, add e2e tests

R*Tree virtual tables enable O(log n) pose-based proximity queries instead
of full-table Python scans. E2E tests verify import pipeline and read-only
queries against real robot sensor data (video + lidar).

* auto index tags

* memory/stream str, and observables

* live stream is a resource

* readme work

* streams and intro

* renamed readme to arch

* Rename memory2 → memory, fix all imports and type errors

- Replace all dimos.memory2 imports with dimos.memory
- Make concrete filter classes inherit from Filter ABC
- Fix mypy errors: type narrowing, Optional guards, annotation mismatches
- Fix test_impl.py: filter_tags() → tags()
- Remove intro.py (superseded by intro.md)
- Delete old dimos/memory2/ directory

* Revert memory rename: restore memory/ from dev, new code lives in memory2/

- Restore dimos/memory/ (old timeseries memory) to match dev
- Move new memory system back to dimos/memory2/ with corrected imports
- Delete dimos/memory_old/ (no longer needed)
- Fix memory_old imports in tf.py, timestamped.py, replay.py → dimos.memory
- Remove dps CLI util and pyproject entry
- Remove unitree_go2_memory blueprint (depends on deleted modules)

* Remove stray old memory module references

- Delete empty dimos/memory/impl/sqlite.py
- Remove nonexistent memory-module entry from all_blueprints
- Restore codeblocks.md from dev

* Remove LFS test databases from PR

These were added during development but shouldn't be in the PR.

* Address review findings: SQL injection guards, type fixes, cleanup

- Remove dead dict(hits) and thread-affinity assertion in SqliteBackend
- Validate order_field and tag keys against _IDENT_RE to prevent SQL injection
- Replace assert bs is not None with RuntimeError for -O safety
- Add hash=False to NearFilter.pose, TagsFilter.tags, PredicateFilter.fn
- Collapse CaptionDetail enum to 3 distinct levels (BRIEF/NORMAL/DETAILED)
- Fix Stream.map() return type: Stream[Any] → Stream[R]
- Update architecture.md: SqliteBackend status Stub → Complete
- Document SqliteBlobStore commit responsibility
- Guard ImageDetections.ts against image=None

* Revert detection type changes: keep image as required field

Restores detection2d/bbox.py, imageDetections.py, and utils.py to
dev state — the image-optional decoupling is not needed for memory2.

* add libturbojpeg to docker image

* Make turbojpeg import lazy so tests skip gracefully in CI

Move top-level turbojpeg import in Image.py to the two methods that
use it, and guard jpeg codec tests behind ImportError / importorskip
so the test suite passes when libturbojpeg is not installed.

* Give each SqliteBackend its own connection for WAL-mode concurrency

Previously all backends shared a single sqlite3.Connection — concurrent
writes from different streams could interleave commits/rollbacks. Now
SqliteSession opens a dedicated connection per backend, with per-backend
blob/vector stores wrapping the same connection for atomicity. A separate
registry connection handles the _streams table.

Also makes SqliteBackend a CompositeResource so session.own(backend)
properly closes connections on stop, and fixes live iterator cleanup in
both backends (backfill phase now inside try/finally).

* Block search_text on SqliteBackend to prevent full table scans

search_text previously loaded every blob from the DB and did Python
substring matching — a silent full table scan. Raise NotImplementedError
instead until proper SQL pushdown is implemented.

* Catch RuntimeError from missing turbojpeg native library in codec tests

TurboJPEG import succeeds but instantiation raises RuntimeError when
the native library isn't installed. Skip the test case gracefully.

* pr comments

* occupancy change undo

* tests cleanup

* compression codec added, new bigoffice db uploaded

* correct jpeg codec

* PR comments cleanup

* blobstore stream -> stream_name

* vectorstore stream -> stream_name

* resource typing fixes

* move type definitions into dimos/memory2/type/ subpackage

Separate pure-definition files (protocols, ABCs, dataclasses) from
implementation files by moving them into a type/ subpackage:
- backend.py → type/backend.py
- type.py → type/observation.py
- filter.py → type/filter.py

Added type/__init__.py with re-exports for convenience imports.
Updated all 24 importing files across the module.

* lz4 codec included, utils/ cleanup

* migrated stores to a new config system

* config fix

* rewrite

* update memory2 docs to reflect new architecture

- Remove Session layer references (Store → Stream directly)
- Backend → Index protocol, concrete Backend composite
- SessionConfig/BackendConfig → StoreConfig
- ListBackend/SqliteBackend → ListIndex/SqliteIndex
- Updated impl README with new 'writing a new index' guide
- Verified intro.md code blocks via md-babel-py

* rename LiveChannel → Notifier, SubjectChannel → SubjectNotifier

Clearer name for the push-notification ABC — "Notifier" directly
conveys its subscribe/notify role without leaking the "live" stream
concept into a lower layer.

* rename Index → MetadataStore, drop Backend property boilerplate, simplify Store.stream()

- Index → MetadataStore, ListIndex → ListMetadataStore, SqliteIndex → SqliteMetadataStore
  Consistent naming with BlobStore/VectorStore. Backend composition reads:
  MetadataStore + BlobStore + VectorStore + Notifier

- Backend: replace _private + @Property accessors with plain public attributes

- Store.stream(): use model_dump(exclude_none=True) instead of manual dict filtering

* rename MetadataStore → ObservationStore

Better name — describes what it stores, not the kind of data.
Parallels BlobStore/VectorStore naturally.

* self-contained SQLite components with dual-mode constructors (conn/path)

Move table DDL into SqliteObservationStore.__init__ so all three SQLite
components (ObservationStore, BlobStore, VectorStore) are self-contained
and can be used standalone with path= without needing a full Store.

- Extract open_sqlite_connection utility from SqliteStore._open_connection
- Add path= keyword to SqliteBlobStore, SqliteVectorStore, SqliteObservationStore
- Promote BlobStore/VectorStore base classes to CompositeResource for
  clean connection ownership via register_disposables
- SqliteStore now closes backend_conn directly instead of via metadata_store.stop()
- Add standalone component tests verifying path= mode works without Store

* move ObservationStore classes into observationstore/ directory

Matches the existing pattern of blobstore/ and vectorstore/ having their
own directories. SqliteObservationStore + helpers moved from impl/sqlite.py,
ListObservationStore moved from impl/memory.py. impl/ files now import
from the new location.

* add RegistryStore to persist fully-resolved backend config per stream

The old _streams table only stored (name, payload_module, codec_id), so
stream overrides (blob_store, vector_store, eager_blobs, page_size, etc.)
were lost on reopen.  RegistryStore stores the complete serialized config
as JSON, enabling _create_backend to reconstruct any stream identically.

Each component (SqliteBlobStore, FileBlobStore, SqliteVectorStore,
SqliteObservationStore, SubjectNotifier) gets a pydantic Config class and
serialize/deserialize methods.  Backend.serialize() orchestrates the
sub-stores.  SqliteStore splits _create_backend into a create path (live
objects) and a load path (deserialized config).  Includes automatic
migration from the legacy three-column schema.

* move ABCs from type/backend.py into their own dirs, rename livechannel → notifier

Each abstract base class now lives as base.py in its implementation
directory: blobstore/base.py, vectorstore/base.py, observationstore/base.py,
notifier/base.py. type/backend.py is deleted. livechannel/ is renamed to
notifier/ with a backwards-compat shim so old serialized registry entries
still resolve via importlib.

* move serialize() to base classes, drop deserialize() in favor of constructor

serialize() is now a concrete method on BlobStore, VectorStore, and Notifier
base classes — implementations inherit it via self._config.model_dump().
deserialize() classmethods are removed entirely; deserialize_component() in
registry.py calls cls(**config) directly. Backend.deserialize() is also
removed (unused — _assemble_backend handles reconstruction).

* move _create_backend to Store base, MemoryStore becomes empty subclass

Store._create_backend is now concrete — resolves codec, instantiates
components (class → instance or uses instance directly), builds Backend.
StoreConfig holds typed component fields (class or instance) with in-memory
defaults. codec removed from StoreConfig (per-stream concern, not store-level).

MemoryStore is now just `pass` — inherits everything from Store.
SqliteStore overrides _create_backend to inject conn-shared components
and registry persistence, then delegates to super().

* move connection init from __init__ to start(), make ObservationStore a Resource

SQLite components (BlobStore, VectorStore, ObservationStore) now defer
connection opening and table creation to start(). __init__ stores config
only. Store._create_backend and SqliteStore._create_backend call start()
on all components they instantiate. ObservationStore converted from
Protocol to CompositeResource base class so all observation stores
inherit start()/stop() lifecycle.

* rename impl/ → store/, move store.py → store/base.py

All store-related code now lives under store/: base class in base.py,
MemoryStore in memory.py, SqliteStore in sqlite.py. store/__init__.py
re-exports public API. Also renamed test_impl.py → test_store.py.

* remove section separator comments from memory2/

* remove __init__.py re-exports, use direct module imports

Subdirectory __init__.py files in memory2/ were re-exporting symbols
from their submodules. Replace all imports with direct module paths
(e.g. utils.sqlite.open_sqlite_connection instead of utils) and
empty out the __init__.py files.

* delete livechannel/ backwards-compat shim

* simplify RegistryStore: drop legacy schema migration

Replace _migrate_or_create with CREATE TABLE IF NOT EXISTS.

* use context managers in standalone component tests

Replace start()/try/finally/stop() with `with` statements.

* delete all __init__.py files from memory2/

No code imports from package-level; all use direct module paths.
Python 3.3+ implicit namespace packages make these unnecessary.

* make all memory2 sub-store components Configurable

Migrate BlobStore, VectorStore, ObservationStore, Notifier, and
RegistryStore to use the Configurable[ConfigT] mixin pattern,
matching the existing Store class. Runtime deps (conn, codec) use
Field(exclude=True) so serialize()/model_dump() skips them.
All call sites updated to keyword args.

* add open_disposable_sqlite_connection and use it everywhere

Centralizes the pattern of opening a SQLite connection paired with a
disposable that closes it, replacing manual Disposable(lambda: conn.close())
at each call site.

* add StreamAccessor for attribute-style stream access on Store

* small cleanups: BlobStore.delete raises KeyError on missing, drop _MISSING sentinel

* checkout mapping/occupancy/gradient.py from dev

* limit opencv threads to 2 by default, checkout worker.py from dev

* test for magic accessor

* ci/pr comments

* widen flaky pointcloud AABB tolerance from 0.1 to 0.2

The test_detection3dpc test fails intermittently in full suite runs
due to non-deterministic point cloud boundary values.

* suppress mypy false positive on scipy distance_transform_edt return type

* ci test fixes

* sam mini PR comments

* replace Generator[T, None, None] with Iterator[T] in memory2 tests

* fix missing TypeVar import in subject.py

* skipping turbojpeg stuff in CI

* removed db from lfs for now

* turbojpeg
* removed redundant rerun teleop methods

* teleop blueprints rename

* pre-commit fixes

* fix: phone teleop import

* fix: comments
* event based sub callback collector for tests

* shorter wait for no msg

* fix(tests): raise AssertionError on CallbackCollector timeout

Instead of silently returning when messages never arrive, wait() now
raises with a clear message showing expected vs received count.
* feat: adding arm_ip and can_port to env

* feat: using env variables in blueprints

* arm_ip env variables

* misc: control blueprints cleanup

* refactor: hardware factories

* fix: pre-commit checks

* fix: gripper check + comments

* fix: gripper addition

* fix: no init needed, blueprint path

* CI code cleanup

* check trigger commit

* fix: unwanted changes

* fix: blueprint path

* fix: remove duplicates

* feat: env var from globalconfig
* fix(cli): speed up `dimos --help` by extracting lightweight type aliases

Move NavigationStrategy and VlModelName type aliases into dimos/core/types.py
so that global_config.py no longer pulls in matplotlib/scipy (via path_map.py)
or torch/langchain (via create.py) at import time. Original modules re-export
from the new file so existing imports continue to work.

`dimos --help` drops from ~3-4s to ~1.9s.

* fix: move type aliases to their respective packages

NavigationStrategy → dimos/mapping/occupancy/types.py
VlModelName → dimos/models/vl/types.py
Remove dimos/core/types.py

* test: add CLI startup speed regression test

Guards against heavy imports (matplotlib, torch, scipy) leaking into
the CLI entrypoint via GlobalConfig. Fails if dimos --help takes >8s.

* CI code cleanup

* fix: exclude .venv and other non-source dirs from doclinks file index

build_file_index now skips paths rooted in .venv, node_modules,
__pycache__, or .git. Fixes test_excludes_venv failure when .venv
is a symlink (not matched by gitignore trailing-slash patterns).

* Revert "fix: exclude .venv and other non-source dirs from doclinks file index"

This reverts commit 61f8588.

---------

Co-authored-by: jeff-hykin <17692058+jeff-hykin@users.noreply.github.com>
Copilot AI review requested due to automatic review settings April 5, 2026 07:26
@leshy leshy closed this Apr 5, 2026
@leshy leshy reopened this Apr 5, 2026
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Pull request overview

This PR modernizes DimOS module wiring and configuration typing while tightening network/security defaults and updating imports across mapping, manipulation, hardware, and agent subsystems.

Changes:

  • Refactors many modules to use typed Module[Config] + pydantic.Field defaults and updates import paths to “leaf” message modules (e.g., ...Pose import Pose).
  • Migrates blueprint building/coordination patterns toward dimos.core.coordination (ModuleCoordinator.build(...)) and MCP-based agent composition (McpServer + McpClient).
  • Introduces/adjusts new APIs and utilities (e.g., navigation map gradient_strategy, new specs/protocols, new adapters/tests, safer localhost binding defaults).

Reviewed changes

Copilot reviewed 243 out of 744 changed files in this pull request and generated 7 comments.

Show a summary per file
File Description
dimos/mapping/utils/distance.py Switches LatLon import to models namespace.
dimos/mapping/test_voxels.py Updates message import path for PointCloud2.
dimos/mapping/pointclouds/test_occupancy_speed.py Fixes TimedSensorReplay import to replay module.
dimos/mapping/pointclouds/test_occupancy.py Updates sensor_msgs PointCloud2 import style.
dimos/mapping/pointclouds/occupancy.py Updates Pose/PointCloud2 imports to leaf modules.
dimos/mapping/pointclouds/demo.py Uses leaf imports for OccupancyGrid/PointCloud2.
dimos/mapping/osm/test_osm.py Switches LatLon import to models namespace.
dimos/mapping/osm/query.py Adds Any typing + generics for VlModel, updates LatLon import.
dimos/mapping/osm/osm.py Moves mapping types to models + leaf Image imports.
dimos/mapping/osm/demo_osm.py Updates agent composition to MCP server/client + blueprint style.
dimos/mapping/osm/current_location_map.py Uses VlModel[Any] typing and LatLon from models.
dimos/mapping/occupancy/visualize_path.py Updates Path import to leaf module.
dimos/mapping/occupancy/visualizations.py Updates Path import to leaf module.
dimos/mapping/occupancy/types.py Replaces TFMessage export with NavigationStrategy type alias definition.
dimos/mapping/occupancy/test_path_resampling.py Updates Pose import to leaf module.
dimos/mapping/occupancy/test_path_mask.py Updates Pose/Image imports to leaf modules.
dimos/mapping/occupancy/test_path_map.py Updates test to pass new gradient_strategy arg.
dimos/mapping/occupancy/path_resampling.py Replaces bulk imports with leaf imports for messages.
dimos/mapping/occupancy/path_mask.py Updates Path import to leaf module.
dimos/mapping/occupancy/path_map.py Adds gradient_strategy parameter + strategy routing.
dimos/mapping/occupancy/gradient.py Adds GradientStrategy alias + improves typing around distance transform.
dimos/mapping/google_maps/test_google_maps.py Switches LatLon import to models namespace.
dimos/mapping/google_maps/google_maps.py Moves google maps types to models; updates LatLon import.
dimos/mapping/costmapper.py Converts config defaults to pydantic Field; uses Module[Config] generics.
dimos/manipulation/test_manipulation_unit.py Updates RobotModelConfig path field name + message imports.
dimos/manipulation/test_manipulation_module.py Updates RobotModelConfig + message imports; renames urdf_path→model_path usage.
dimos/manipulation/planning/utils/path_utils.py Updates JointState import + refactors TYPE_CHECKING imports.
dimos/manipulation/planning/utils/mesh_utils.py Replaces xacro monkey-patching with shared process_xacro helper.
dimos/manipulation/planning/utils/kinematics_utils.py Refactors Jacobian import path.
dimos/manipulation/planning/utils/init.py Removes package re-export barrel for planning utils.
dimos/manipulation/planning/trajectory_generator/spec.py Updates JointTrajectory import to leaf module.
dimos/manipulation/planning/trajectory_generator/joint_trajectory_generator.py Updates trajectory message imports to leaf modules.
dimos/manipulation/planning/spec/protocols.py Refactors spec type imports; adds get_obstacles to WorldSpec.
dimos/manipulation/planning/spec/models.py Updates PoseStamped/JointState imports; trims section comments.
dimos/manipulation/planning/spec/config.py Migrates RobotModelConfig to ModuleConfig w/ pydantic defaults and model_path.
dimos/manipulation/planning/spec/init.py Removes spec barrel export module.
dimos/manipulation/planning/planners/rrt_planner.py Refactors spec imports + JointState leaf import; comment cleanup.
dimos/manipulation/planning/planners/init.py Removes planners barrel export module.
dimos/manipulation/planning/monitor/world_state_monitor.py Updates JointState import and WorldSpec import path.
dimos/manipulation/planning/monitor/world_obstacle_monitor.py Refactors imports; changes default use_mesh_obstacles; adds remove_object_obstacle.
dimos/manipulation/planning/monitor/init.py Removes monitor barrel export module.
dimos/manipulation/planning/kinematics/pinocchio_ik.py Leaf imports for Pose types; comment cleanup.
dimos/manipulation/planning/kinematics/jacobian_ik.py Refactors spec imports; leaf imports for messages; comment cleanup.
dimos/manipulation/planning/kinematics/drake_optimization_ik.py Refactors spec imports; leaf imports for PoseStamped/Transform/JointState.
dimos/manipulation/planning/kinematics/init.py Removes kinematics barrel export module.
dimos/manipulation/planning/factory.py Updates TYPE_CHECKING protocol imports.
dimos/manipulation/planning/examples/manipulation_client.py Leaf imports; preserves EE orientation when rpy not provided.
dimos/manipulation/planning/examples/init.py Removes examples barrel module.
dimos/manipulation/planning/init.py Removes planning module lazy-loader export surface.
dimos/manipulation/planning/README.md Renames config field to model_path in docs.
dimos/manipulation/manipulation_interface.py Comment cleanup only.
dimos/manipulation/grasping/grasping.py Moves RPC dependencies to typed Specs; leaf imports; removes blueprint alias exports.
dimos/manipulation/grasping/graspgen_module.py Migrates to docker module config; adjusts Module generics and typing; removes all.
dimos/manipulation/grasping/grasp_gen_spec.py Replaces stale docstring with GraspGenSpec protocol.
dimos/manipulation/grasping/demo_grasping.py Updates blueprint composition to MCP + class blueprints.
dimos/manipulation/grasping/init.py Removes grasping barrel exports.
dimos/manipulation/control/trajectory_controller/spec.py Updates TYPE_CHECKING imports to leaf modules.
dimos/manipulation/control/trajectory_controller/joint_trajectory_controller.py Converts to Module[Config] and uses shared join timeout constant.
dimos/manipulation/control/trajectory_controller/init.py Removes trajectory_controller barrel exports.
dimos/manipulation/control/servo_control/init.py Removes servo_control barrel exports.
dimos/manipulation/control/coordinator_client.py Leaf imports; comment cleanup.
dimos/manipulation/control/arm_driver_spec.py Adds ArmDriverSpec protocol for FK/IK RPC surface.
dimos/manipulation/control/init.py Removes manipulation control barrel exports.
dimos/manipulation/init.py Removes manipulation barrel exports.
dimos/hardware/sensors/lidar/livox/module.py Updates coordination imports; converts to generic NativeModule; removes blueprint alias exports.
dimos/hardware/sensors/lidar/livox/livox_blueprints.py Updates blueprint composition + rerun bridge module naming.
dimos/hardware/sensors/lidar/fastlio2/module.py Migrates config path handling to pydantic pipeline; generic NativeModule; removes blueprint alias exports.
dimos/hardware/sensors/lidar/fastlio2/fastlio_blueprints.py Updates coordination + rerun bridge blueprint usage.
dimos/hardware/sensors/fake_zed_module.py Converts to Module[Config] pattern, leaf imports, replay import fix.
dimos/hardware/sensors/camera/zed/test_zed.py Skips ZED test when SDK missing; imports compat layer explicitly.
dimos/hardware/sensors/camera/zed/compat.py Adds SDK detection layer + safe stubs; removes zed_camera export.
dimos/hardware/sensors/camera/zed/camera.py Converts config defaults to pydantic Field; shared join timeout; updates ModuleCoordinator import.
dimos/hardware/sensors/camera/webcam.py Leaf imports for CameraInfo/Image.
dimos/hardware/sensors/camera/spec.py Refactors config/type base classes and service imports.
dimos/hardware/sensors/camera/realsense/camera.py Converts config defaults to pydantic Field; shared join timeout; removes blueprint alias exports.
dimos/hardware/sensors/camera/realsense/init.py Removes lazy-loader export pattern.
dimos/hardware/sensors/camera/module.py Converts CameraModuleConfig defaults to pydantic Field; updates blueprint usage.
dimos/hardware/sensors/camera/gstreamer/gstreamer_sender.py Defaults listen host to localhost for safer networking; updates CLI docs.
dimos/hardware/sensors/camera/gstreamer/gstreamer_camera_test_script.py Updates ModuleCoordinator import + pubsub autoconf path.
dimos/hardware/sensors/camera/gstreamer/gstreamer_camera.py Converts to Module[Config], moves params into config, uses shared join timeout.
dimos/hardware/manipulators/xarm/adapter.py Comment cleanup only.
dimos/hardware/manipulators/spec.py Leaf imports and comment cleanup for adapter protocol.
dimos/hardware/manipulators/sim/adapter.py Adds MuJoCo simulation adapter + registry registration hook.
dimos/hardware/manipulators/registry.py Reworks adapter discovery to directory scan (adapter.py presence).
dimos/hardware/manipulators/piper/adapter.py Comment cleanup only.
dimos/hardware/manipulators/mock/init.py Removes mock adapter barrel file.
dimos/hardware/manipulators/init.py Removes manipulators barrel export module.
dimos/hardware/drive_trains/spec.py Comment cleanup only.
dimos/hardware/drive_trains/registry.py Reworks discovery to filesystem scan; allows callable adapters.
dimos/hardware/drive_trains/mock/adapter.py Comment cleanup only.
dimos/hardware/drive_trains/flowbase/adapter.py Comment cleanup only.
dimos/hardware/drive_trains/flowbase/init.py Removes flowbase barrel file.
dimos/experimental/security_demo/conftest.py Adds fixtures for security demo testing with extensive mocking.
dimos/e2e_tests/test_spatial_memory.py Updates MCP RPC topic naming.
dimos/e2e_tests/test_simulation_module.py Removes simulation module e2e tests file.
dimos/e2e_tests/test_security_module.py Adds MCP-backed security module e2e test.
dimos/e2e_tests/test_scan_and_follow_person.py Updates MCP RPC topic naming.
dimos/e2e_tests/test_person_follow.py Updates MCP RPC topic naming.
dimos/e2e_tests/test_patrol_and_follow.py Adds patrol+follow e2e test flow.
dimos/e2e_tests/test_dimos_cli_e2e.py Updates MCP RPC topic naming in CLI e2e.
dimos/e2e_tests/test_control_coordinator.py Leaf imports for JointState / trajectory messages.
dimos/e2e_tests/lcm_spy.py Switches DimosMsg import location + PoseStamped leaf import.
dimos/e2e_tests/conftest.py Adds explore_office fixtures using DirectCmdVelExplorer; leaf imports updates.
dimos/core/worker_manager.py Removes old WorkerManager implementation (moved to coordination managers).
dimos/core/transport.py Defers jpeg-related imports to avoid heavy dependency import cost at startup.
dimos/core/tests/stress_test_blueprint.py Updates autoconnect import path.
dimos/core/tests/demo_mcp_killtest.py Updates coordination imports; uses ModuleCoordinator.build.
dimos/core/testing.py Updates joins to shared timeout; leaf imports; Module init kwargs.
dimos/core/test_stream.py Fixes type annotations and Module init kwargs; leaf imports.
dimos/core/test_rpcstress.py Updates ModuleCoordinator import path.
dimos/core/test_native_module.py Updates build pattern; adds thread cleanup to reduce flakiness.
dimos/core/test_mcp_integration.py Updates autoconnect + ModuleCoordinator.build usage; comment cleanup.
dimos/core/test_global_config.py Replaces incorrect content with GlobalConfig security default tests.
dimos/core/test_daemon.py Updates health_check tests to match manager-based coordinator.
dimos/core/test_core.py Updates imports and expected RPC count.
dimos/core/test_cli_stop_status.py Comment cleanup only.
dimos/core/run_registry.py Moves signal import to top-level.
dimos/core/rpc_client.py Updates RPC plumbing to new worker proxy + rpc timeout configuration.
dimos/core/resource_monitor/stats.py Updates ttl_cache import path.
dimos/core/resource_monitor/init.py Removes resource_monitor barrel exports.
dimos/core/resource.py Rebuilds Resource on top of reactivex Disposable + adds context manager + CompositeResource.
dimos/core/library_config.py Adds process-wide default configuration (OpenCV thread limiting).
dimos/core/introspection/svg.py Updates Blueprint import path to coordination module.
dimos/core/introspection/module/info.py Adjusts which RPCs are treated as internal.
dimos/core/introspection/module/init.py Removes introspection module barrel exports.
dimos/core/introspection/blueprint/dot.py Updates Blueprint import path + Module base type usage.
dimos/core/introspection/init.py Removes introspection barrel exports.
dimos/core/global_config.py Tightens defaults (mcp_host localhost); adds xarm ips/can port; adjusts model name typing.
dimos/core/daemon.py Updates ModuleCoordinator typing import + comment cleanup.
dimos/core/core.py Removes eager Open3D pickler registration at import time.
dimos/core/coordination/worker_manager_docker.py Adds Docker deployment worker manager implementation.
dimos/core/coordination/worker_manager.py Introduces WorkerManager protocol abstraction.
dimos/core/coordination/python_worker.py Renames Worker→PythonWorker; injects GlobalConfig; applies library config in worker.
dimos/core/conftest.py Updates ModuleCoordinator import path.
dimos/control/tick_loop.py Uses shared thread join timeout; leaf import update.
dimos/control/test_control.py Leaf imports for trajectory messages; comment cleanup.
dimos/control/tasks/velocity_task.py Comment cleanup only.
dimos/control/tasks/trajectory_task.py Leaf imports for trajectory messages; comment cleanup.
dimos/control/tasks/teleop_task.py Leaf imports for pose types; comment cleanup.
dimos/control/tasks/servo_task.py Comment cleanup only.
dimos/control/tasks/cartesian_ik_task.py Leaf imports for pose types; comment cleanup.
dimos/control/tasks/init.py Removes tasks barrel exports.
dimos/control/task.py Leaf imports for pose types; comment cleanup.
dimos/control/examples/twist_base_keyboard_teleop.py Updates blueprint build to ModuleCoordinator.build; KeyboardTeleop class blueprint.
dimos/control/examples/cartesian_ik_jogger.py Leaf import for PoseStamped in runtime import locations.
dimos/control/components.py Adds adapter_kwargs for hardware component configuration.
dimos/control/blueprints/mobile.py Adds mobile manipulation coordinator blueprints.
dimos/control/blueprints/dual.py Adds dual-arm coordinator blueprints using new GlobalConfig fields.
dimos/control/init.py Removes control module barrel exports.
dimos/control/README.md Updates blueprint usage example to ControlCoordinator.blueprint.
dimos/constants.py Introduces shared DEFAULT_THREAD_JOIN_TIMEOUT constant.
dimos/conftest.py Updates ModuleCoordinator import path.
dimos/agents_deprecated/prompt_builder/impl.py Comment cleanup only.
dimos/agents_deprecated/modules/gateway/init.py Removes gateway barrel exports.
dimos/agents_deprecated/modules/base_agent.py Introduces BaseAgentConfig ModuleConfig and Module[Config] usage.
dimos/agents_deprecated/modules/base.py Updates UnifiedGatewayClient import paths.
dimos/agents_deprecated/memory/image_embedding.py Suppresses missing onnxruntime import error for typing.
dimos/agents_deprecated/agent.py Comment cleanup only.
dimos/agents/web_human_input.py Uses shared thread join timeout; removes blueprint alias exports.
dimos/agents/vlm_stream_tester.py Switches to VLMAgentSpec injection and shared join timeout; leaf Image import.
dimos/agents/vlm_agent_spec.py Adds VLMAgentSpec protocol.
dimos/agents/vlm_agent.py Converts to Module[VLMAgentConfig]; leaf Image import; removes blueprint alias exports.
dimos/agents/skills/test_unitree_skill_container.py Adds stub modules to satisfy RPC dependencies during tests.
dimos/agents/skills/test_gps_nav_skills.py Adds StubWebsocketVis and updates LatLon import to models.
dimos/agents/skills/test_google_maps_skill_container.py Updates imports; Module init kwargs; LatLon moved to models.
dimos/agents/skills/speak_skill_spec.py Replaces stale re-export with SpeakSkillSpec protocol.
dimos/agents/skills/speak_skill.py Adds non-blocking speech mode and thread tracking.
dimos/agents/skills/osm.py Updates LatLon import to models and removes blueprint alias exports.
dimos/agents/skills/gps_nav_skill.py Switches to WebsocketVisSpec dependency instead of manual RpcCall wiring.
dimos/agents/skills/google_maps_skill_container.py LatLon import move + Module init kwargs; removes blueprint alias exports.
dimos/agents/skills/demo_skill.py Rebuilds demo skill blueprint using MCP server/client.
dimos/agents/skills/demo_robot.py LatLon import to models; removes blueprint alias exports.
dimos/agents/skills/demo_gps_nav.py Rebuilds demo GPS nav blueprint using MCP server/client.
dimos/agents/skills/demo_google_maps_skill.py Rebuilds demo Google Maps blueprint using MCP server/client.
dimos/agents/skills/demo_calculator_skill.py Removes blueprint alias export wiring.
dimos/agents/mcp/test_mcp_client.py Leaf Image import; reduces per-instance init logic in test modules.
dimos/agents/mcp/mcp_server.py Refactors imports; adds explicit concurrent.futures; introduces thread-safety TODO note.
dimos/agents/mcp/mcp_adapter.py Comment cleanup only.
dimos/agents/mcp/conftest.py Updates build to ModuleCoordinator.build.
dimos/agents/mcp/README.md Updates CLI invocation to new agentic blueprint name.
dimos/agents/fixtures/test_prompt.json Removes fixture JSON file.
dimos/agents/fixtures/test_multiple_tool_calls_with_multiple_messages.json Removes fixture JSON file.
dimos/agents/fixtures/test_image.json Removes fixture JSON file.
dimos/agents/fixtures/test_can_call_tool.json Removes fixture JSON file.
dimos/agents/fixtures/test_can_call_again_on_error.json Removes fixture JSON file.
dimos/agents/demo_agent.py Rebuilds demo agent blueprints using MCP and CameraModule blueprint.
dimos/agents/conftest.py Switches test harness to MCP client/server and ModuleCoordinator.build.
dimos/agents/agent_test_runner.py Migrates messages into ModuleConfig; switches AgentSpec import path.
dimos/agents/agent_spec.py Adds AgentSpec protocol.
data/.lfs/xarm6.tar.gz Adds Git LFS pointer for xarm6 artifact.
data/.lfs/unity_sim_x86.tar.gz Adds Git LFS pointer for unity simulator artifact.
data/.lfs/security_no_detection.png.tar.gz Adds Git LFS pointer for security fixture image artifact.
data/.lfs/security_detection.png.tar.gz Adds Git LFS pointer for security fixture image artifact.
data/.lfs/piper.tar.gz Adds Git LFS pointer for piper artifact.
data/.lfs/go2_bigoffice.db.tar.gz Adds Git LFS pointer for database artifact.
README.md Updates CLI docs and blueprint example to MCP-based wiring.
.github/workflows/tests.yml Adds workflow timeout to avoid runaway CI jobs.
.github/workflows/stale.yml Adds stale PR automation workflow.
.github/ISSUE_TEMPLATE/spec.yml Adds a “Spec” issue template for technical design docs.

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occupancy_grid: OccupancyGrid,
robot_width: float,
strategy: NavigationStrategy,
gradient_strategy: GradientStrategy,
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This change makes gradient_strategy a required parameter even though the previous behavior implicitly used voronoi_gradient. If avoiding a breaking API change is required, give gradient_strategy a default (e.g., defaulting to the previous behavior) so existing call sites keep working while still allowing overrides.

Suggested change
gradient_strategy: GradientStrategy,
gradient_strategy: GradientStrategy = "voronoi",

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try:
generate = self.get_rpc_calls("GraspGenModule.generate_grasps")
result = generate(pc, scene_pc)
result = self._grasp_gen.generate_grasps(pc, scene_pc)
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self._grasp_gen and self._scene_registration are now used directly, but this diff doesn’t show them being initialized in __init__/start(). If these are not guaranteed to be injected by the framework before use, this will raise AttributeError at runtime. A concrete fix is to initialize them explicitly during start() (e.g., by resolving them from system modules / dependency injection) and raise a clear error if not available.

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"ObjectSceneRegistrationModule.get_object_pointcloud_by_name"
)
return get_pc(object_name) # type: ignore[no-any-return]
return self._scene_registration.get_object_pointcloud_by_object_id(object_id) # type: ignore[no-any-return]
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self._grasp_gen and self._scene_registration are now used directly, but this diff doesn’t show them being initialized in __init__/start(). If these are not guaranteed to be injected by the framework before use, this will raise AttributeError at runtime. A concrete fix is to initialize them explicitly during start() (e.g., by resolving them from system modules / dependency injection) and raise a clear error if not available.

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# Convert to meters and clip to max distance
distance_meters = np.clip(distance_cells * occupancy_grid.resolution, 0, max_distance)
distance_meters = np.clip(distance_cells * occupancy_grid.resolution, 0, max_distance) # type: ignore[operator]
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The # type: ignore[operator] on the distance_cells * occupancy_grid.resolution expression suggests OccupancyGrid.resolution isn’t typed as a numeric scalar. Instead of ignoring the operator error here, prefer fixing the type at the source (e.g., ensure resolution is typed as float) or cast locally (e.g., float(occupancy_grid.resolution)) so type checking remains meaningful.

Suggested change
distance_meters = np.clip(distance_cells * occupancy_grid.resolution, 0, max_distance) # type: ignore[operator]
distance_meters = np.clip(distance_cells * float(occupancy_grid.resolution), 0, max_distance)

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Comment on lines +122 to +127
@pytest.fixture
def direct_cmd_vel_explorer() -> Generator[PersonTrackPublisher, None, None]:
explorer = DirectCmdVelExplorer()
explorer.start()
yield explorer
explorer.stop()
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The fixture return annotation is Generator[PersonTrackPublisher, ...] but the yielded object is a DirectCmdVelExplorer. This is a concrete type mismatch that can hide real errors (and can break strict type-checking). Update the annotation to Generator[DirectCmdVelExplorer, None, None] (or a compatible protocol/base type).

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Comment on lines +19 to +25
from dimos.core.coordination.blueprints import autoconnect

autoconnect(
from dimos.core.coordination.module_coordinator import ModuleCoordinator
ModuleCoordinator.build(autoconnect(
Mid360.blueprint(host_ip="192.168.1.5"),
SomeConsumer.blueprint(),
).build().loop()
)).loop()
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The usage snippet appears to have mismatched parentheses: ModuleCoordinator.build(autoconnect(... )).loop() implies build() returns a coordinator that has loop(), but the example formatting currently makes it hard to verify correctness at a glance. Please adjust the example to a clearly valid call structure (and ensure it matches the actual ModuleCoordinator.build(...) return type and how users should run the coordinator).

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Comment on lines 191 to 194
def on_system_modules(self, modules: list[RPCClient]) -> None:
# TODO: this is a bit hacky, also not thread-safe
assert self.rpc is not None
app.state.skills = [
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Copilot AI Apr 5, 2026

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The code acknowledges on_system_modules mutates app.state in a way that is not thread-safe. Because MCP requests can be served concurrently, this can lead to races (partially updated skills/rpc_calls). A tangible fix is to protect updates with a lock (e.g., a module-level threading.Lock) and to assign fully-built new dict/list objects atomically under that lock.

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@leshy leshy closed this Apr 5, 2026
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9 participants