Merge latest commits in main to stable branch

.github/workflows/benchmark.yml

@@ -18,7 +18,7 @@ jobs:
     strategy:
       matrix:
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
-        python-ver: ['3.9', '3.13']
+        python-ver: ['3.10', '3.13']
 
     steps:
       - uses: actions/checkout@v6

.github/workflows/docker-deploy.yml

@@ -14,12 +14,14 @@ jobs:
         with:
           submodules: 'recursive'
       - name: Log in to Docker Hub
-        uses: docker/login-action@v3
+        uses: docker/login-action@v4
         with:
           username: ${{ vars.DOCKER_USERNAME }}
           password: ${{ secrets.DOCKER_TOKEN }}
 
       - name: Build image and push to Docker Hub
         run: |
           docker build -t ${{ vars.DOCKER_USERNAME }}/neurocaps:${{ github.ref_name }} -f docker/Dockerfile . &&
-          docker push ${{ vars.DOCKER_USERNAME }}/neurocaps:${{ github.ref_name }}
+          docker push ${{ vars.DOCKER_USERNAME }}/neurocaps:${{ github.ref_name }} &&
+          docker tag ${{ vars.DOCKER_USERNAME }}/neurocaps:${{ github.ref_name }} ${{ vars.DOCKER_USERNAME }}/neurocaps:latest &&
+          docker push ${{ vars.DOCKER_USERNAME }}/neurocaps:latest

.github/workflows/minimum_dependencies.yml

@@ -18,7 +18,7 @@ jobs:
     strategy:
       matrix:
         os: ['ubuntu-latest', 'macos-latest', 'windows-latest']
-        python-ver: ['3.9']
+        python-ver: ['3.10']
 
     name: Python ${{ matrix.python-ver }} check on ${{ matrix.os }}
     steps:

.github/workflows/precommit.yml

@@ -17,7 +17,7 @@ jobs:
           fetch-depth: 0
       - uses: actions/setup-python@v6
         with:
-          python-version: '3.9'
+          python-version: '3.10'
 
       - name: Install precommit
         run: |

.github/workflows/python-publish.yml

@@ -18,7 +18,7 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v6
       with:
-        python-version: '3.9'
+        python-version: '3.10'
 
     - name: Install dependencies
       run: |

.github/workflows/testing.yaml

@@ -44,7 +44,7 @@ jobs:
         shell: bash
 
       - name: Install pytest-forked for Ubuntu Python 3.11+
-        if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-ver != '3.9' && matrix.python-ver != '3.10' }}
+        if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-ver != '3.10' }}
         run: pip install pytest-forked
         shell: bash
 
@@ -64,19 +64,12 @@ jobs:
           run: pytest tests/ --cov neurocaps -v
 
       - name: Run tests without coverage for Ubuntu on Python 3.11-3.14 (forked)
-        if: ${{ matrix.os == 'ubuntu-latest' && (matrix.python-ver == '3.11' || matrix.python-ver == '3.12' || matrix.python-ver == '3.13' || matrix.python-ver == '3.14') }}
+        if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-ver != '3.10' }}
         uses: coactions/setup-xvfb@v1
         with:
           options: -screen 0 1600x1200x24
           run: pytest tests/ --forked -v
 
-      - name: Run tests without coverage for Ubuntu on Python 3.9
-        if: ${{ matrix.os == 'ubuntu-latest' && (matrix.python-ver == '3.9') }}
-        uses: coactions/setup-xvfb@v1
-        with:
-          options: -screen 0 1600x1200x24
-          run: pytest tests/ -v
-
       - name: Run tests without coverage for Mac
         if: ${{ matrix.os == 'macos-latest' }}
         run: pytest . -v
@@ -91,6 +84,6 @@ jobs:
 
       - name: Upload coverage reports to Codecov for Ubuntu
         if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-ver == '3.10' }}
-        uses: codecov/codecov-action@v5.5.2
+        uses: codecov/codecov-action@v6.0.0
         with:
           token: ${{ secrets.CODECOV_TOKEN }}

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v5.0.0
+    rev: v6.0.0
     hooks:
     -   id: trailing-whitespace
     -   id: end-of-file-fixer
@@ -12,7 +12,7 @@ repos:
     -   id: mixed-line-ending
 
 -   repo: https://github.com/psf/black
-    rev: 25.1.0
+    rev: 26.3.1
     hooks:
     -   id: black
         args: [--line-length=100]
@@ -21,15 +21,16 @@ repos:
         - black[jupyter]
 
 -   repo: https://github.com/adamchainz/blacken-docs
-    rev: 1.19.1
+    rev: 1.20.0
     hooks:
     -   id: blacken-docs
         args: [--line-length=90]
+        exclude: 'archives/'
         additional_dependencies:
         - black
 
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.11.6
+    rev: v0.15.8
     hooks:
         - id: ruff
           # Ensure no print statements are in the codebase; only logging allowed

CHANGELOG.md

@@ -15,6 +15,15 @@ noted in the changelog (e.g., new functions or parameters, changes in parameter
 improvements/enhancements. All fixes and modifications are backwards compatible.
 - *.postN* : Consists of documentation changes or metadata-related updates, such as modifications to type hints.
 
+## [0.37.4] - 2026-05-09
+### ♻ Changed
+- ``high_pass`` is now automatically set to ``None`` with a warning when cosine regressors are detected in user-specified `confound_names`, preventing multicollinearity between nilearn's DCT basis functions and fMRIPrep's cosine regressors.
+
+## [0.37.3] - 2026-04-16
+### ♻ Changed
+- Added support for the ``NEUROCAPS_DATA`` environment variable to override the default data directory location used by fetch_preset_parcel_approach. Defaults to "~/neurocaps_data" when unset.
+- Dropped Python 3.9 support
+
 ## [0.37.2] - 2026-02-19
 ### 💻 Metadata
 - Update metadata on Pypi

README.md

@@ -2,7 +2,7 @@
 
 [![Latest Version](https://img.shields.io/pypi/v/neurocaps.svg)](https://pypi.python.org/pypi/neurocaps/)
 [![Python Versions](https://img.shields.io/pypi/pyversions/neurocaps.svg)](https://pypi.python.org/pypi/neurocaps/)
-[![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.11642615-teal)](https://doi.org/10.5281/zenodo.18529846)
+[![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.11642615-teal)](https://doi.org/10.5281/zenodo.19602764)
 [![Test Status](https://github.com/donishadsmith/neurocaps/actions/workflows/testing.yaml/badge.svg)](https://github.com/donishadsmith/neurocaps/actions/workflows/testing.yaml)
 [![Documentation Status](https://readthedocs.org/projects/neurocaps/badge/?version=stable)](http://neurocaps.readthedocs.io/en/stable/?badge=stable)
 [![codecov](https://codecov.io/github/donishadsmith/neurocaps/branch/main/graph/badge.svg?token=WS2V7I16WF)](https://codecov.io/github/donishadsmith/neurocaps)
@@ -18,7 +18,7 @@ k-means clustering on BOLD timeseries data [^1].
 </p>
 
 ## Installation
-**Requires Python 3.9-3.14.**
+**Requires Python 3.10-3.14.**
 
 ### Standard Installation
 ```bash