Fix download_eggnog_data.py database URL#574
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AggressiveHayBale wants to merge 1 commit intoeggnogdb:masterfrom
Open
Fix download_eggnog_data.py database URL#574AggressiveHayBale wants to merge 1 commit intoeggnogdb:masterfrom
AggressiveHayBale wants to merge 1 commit intoeggnogdb:masterfrom
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RoshTzsche
approved these changes
Oct 12, 2025
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I don't want to be annoying but could you look at that @Cantalapiedra ? It is a simple solution but at the moment people can't use the tool that easily. |
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@AggressiveHayBale Thank you for your comment. It helped to resolve the issue. |
Author
Happy to help! |
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True! Change "eggnogdb.embl.de" in # BASE_URL = f'http://eggnogdb.embl.de/download/emapperdb-{__DB_VERSION__}'
BASE_URL = f'http://eggnog5.embl.de/download/emapperdb-{__DB_VERSION__}'
EGGNOG_URL = f'http://eggnog5.embl.de/download/eggnog_5.0/per_tax_level'
EGGNOG_DOWNLOADS_URL = 'http://eggnog5.embl.de/#/app/downloads'
# NOVEL_FAMS_BASE_URL = f'http://eggnogdb.embl.de/download/novel_fams-{__NOVEL_FAMS_DB_VERSION__}'
NOVEL_FAMS_BASE_URL = f'http://eggnog5.embl.de/download/novel_fams-{__NOVEL_FAMS_DB_VERSION__}' |
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For anyone waiting for this to be implemented, for my own convenience I've written a Python package to make the fix in a simple way. See it on PyPI, in case you find it useful: |
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Per issue #571 and @jelmerp suggestion the BASE_URL and NOVEL_FAMS_BASE_URL URL's 404 error making impossible to download database.
The small fix changes base url from eggnogdb.embl.de to eggnog5.embl.de
It is tested and it is working