List view

• Wet-lab Validation

  Ongoing, never closes. Each wet-lab result as a separate issue. Links to specific version milestones (5' Ramp → v3.5, Viral Delivery → v3.5 etc). Summary in VALIDATION.md.

  No due date

  •0/1 issues closed
  0% complete1 open0 closed

• Stable Release

  Full API docstring coverage, reproducible benchmark scripts, tutorial expansion, state of the field comparison

  No due date

  •1/2 issues closed
  50% complete1 open1 closed

• ML Engine (v4.0)

  --engine ml, wet-lab data-based training pipeline, rule-based vs ML comparison benchmark, uncertainty output

  No due date

  •0/1 issues closed
  0% complete1 open0 closed

• Validation & Host Expansion

  5' Ramp activation (wet-lab conditional), Viral Delivery activation (wet-lab conditional), Tissue-specific optimization, documentation audit

  No due date

  •3/8 issues closed
  37% complete5 open3 closed

• Algorithm & Protein Depth

  tAI, 5' UTR mRNA folding optimization, Codon pair bias, Kozak context, Extended DP engine

  No due date

  •1/10 issues closed
  10% complete9 open1 closed

• Accessibility + Foundation

  Bioconda, Batch API, Profile comparison, CODE_OF_CONDUCT.md, Additional plant hosts (BY-2+), Tutorial/worked example

  No due date

  •7/8 issues closed
  87% complete1 open7 closed