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Update 17 packages #144

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Merged
avallecam merged 2 commits into from
Mar 20, 2026
Merged

Update 17 packages #144

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9893324
[actions] update 17 packages
Bisaloo Mar 3, 2026
e797b89
add "drop_last" to suppress dplyr summarise warnings
avallecam Mar 20, 2026
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4 changes: 2 additions & 2 deletions episodes/compare-interventions.Rmd
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Original file line number Diff line number Diff line change
Expand Up @@ -204,7 +204,7 @@ If we wanted to quantify the impact of the intervention over the model output th
output %>%
filter(compartment == "infectious") %>%
group_by(time, intervention_type) %>%
summarise(value_total = sum(value)) %>%
summarise(value_total = sum(value), .groups = "drop_last") %>%
group_by(intervention_type) %>%
mutate(cum_value = cumsum(value_total)) %>%
ggplot() +
Expand Down Expand Up @@ -454,7 +454,7 @@ output_vacamole <- rbind(output_intervention_vc, output_baseline_vc)
output_vacamole %>%
filter(compartment == "dead") %>%
group_by(time, intervention_type) %>%
summarise(value_total = sum(value)) %>%
summarise(value_total = sum(value), .groups = "drop_last") %>%
group_by(intervention_type) %>%
mutate(cum_value = cumsum(value_total)) %>%
ggplot() +
Expand Down
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