Feat/plan depth#5
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- Introduced a new script for planning sequencing depth based on ranked pairs. - Updated README and scripts documentation to include usage examples. - Added tests for the new functionality to ensure accuracy and reliability. - Modified Makefile to include the new script in build and install processes.
- Introduced `radigest-bench-screen-cached` for performance benchmarking. - Added support for timing various phases of the pair-screen process. - Updated README with usage instructions for the new benchmark tool. - Enhanced Makefile to build and install the new benchmark binary. - Added tests to validate the benchmark tool's output and functionality.
- Introduced `--build-workers` flag to control parallelism in cut-index construction. - Updated `BuildCutIndex` functions to support concurrent enzyme scanning. - Modified relevant tests to validate new parallel behavior. - Enhanced documentation to reflect new command-line option.
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