Feat/design pairs#6
Merged
Merged
Conversation
- Introduced `radigest-design-pairs` for enzyme pair screening. - Added detailed output in TSV and JSON formats for design results. - Implemented command-line options for user-defined parameters. - Enhanced README with usage instructions and examples.
- Updated command name in code and documentation. - Adjusted output file names from design_pairs to design. - Added aliases for command flags for better usability. - Ensured backward compatibility with concise aliases.
- Introduced BED6 format for fragment output. - Updated CLI to accept `-bed` flag for specifying BED output. - Modified JSON summary to include BED output path. - Enhanced tests to validate BED output functionality. - Updated documentation to reflect new BED output feature.
- Introduce fit_score and fit_loss metrics for candidate evaluation. - Update output formats to reflect new metrics in TSV and JSON files. - Modify README to document new build and install commands for developers. - Adjust CLI parameters to use target_mean_locus_depth instead of desired_depth. - Ensure backward compatibility by removing deprecated fields in outputs.
- Introduced `design.summary.tsv` for compact human-readable results. - Updated command usage to reflect new output options. - Modified output paths to include summary TSV. - Enhanced help documentation for clarity on new features. - Updated tests to validate summary TSV generation and content.
- Updates the version number in the main application file.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.