Full Autotools build

.gitignore

@@ -20,3 +20,17 @@ invert
 offline_measurement
 lib/
 benchmark
+Makefile.in
+/aclocal.m4
+/compile
+/config.guess
+/config.h.in
+/config.sub
+/depcomp
+/install-sh
+/missing
+/ylwrap
+/GPATH
+/GRTAGS
+/GTAGS
+/compile_commands.json

Makefile.am

@@ -0,0 +1,102 @@
+lib_LIBRARIES=lib/libtmLQCD.a
+
+AM_LDFLAGS=-L@top_builddir@/lib 
+LDADD=@top_builddir@/lib/libtmLQCD.a
+
+## the GPU modules (all .cu files in $GPUDIR)
+#GPUSOURCES := $(wildcard $(srcdir)/$(GPUDIR)/*.cu)
+#GPUOBJECTS := $(patsubst $(srcdir)/$(GPUDIR)/%.cu, $(GPUDIR)/%.o, $(GPUSOURCES))
+
+#GPUSOURCES_C := $(wildcard $(srcdir)/$(GPUDIR)/*.c)
+#GPUOBJECTS_C := $(patsubst $(srcdir)/$(GPUDIR)/%.c, $(GPUDIR)/%.o, $(GPUSOURCES_C))
+
+#NOOPTMOD = test/check_xchange test/check_geometry
+
+bin_PROGRAMS = \
+	hmc_tm \
+	invert \
+	benchmark \
+	offline_measurement
+
+# run the GIT-VERSION-GEN script to generate version information in git_hash.h
+# making sure that we run in the correct directory
+git_hash.h: $(top_srcdir)/.git/HEAD $(top_srcdir)/.git/index Makefile
+	@ ( cd @srcdir@ && sh GIT-VERSION-GEN )
+BUILT_SOURCES=git_hash.h
+
+# The rules for unit tests are kept in a separate file for tidyness
+#include ${top_srcdir}/Makefile.tests
+lib_libtmLQCD_a_SOURCES= \
+	DDalphaAMG_interface.c \
+	P_M_eta.c \
+	Ptilde_nd.c \
+	X_psi.c \
+	aligned_malloc.c \
+	block.c \
+	boundary.c \
+	chebyshev_polynomial_nd.c \
+	deriv_Sb.c \
+	deriv_Sb_D_psi.c \
+	expo.c \
+	fatal_error.c \
+	gamma.c \
+	geometry_eo.c \
+	get_rectangle_staples.c \
+	get_staples.c \
+	getopt.c \
+	gettime.c \
+	integrator.c \
+	invert_clover_eo.c \
+	invert_doublet_eo.c \
+	invert_eo.c \
+	invert_overlap.c \
+	jacobi.c \
+	little_D.c \
+	matrix_utils.c \
+	measure_gauge_action.c \
+	measure_rectangles.c \
+	mpi_init.c \
+	operator.c \
+	phmc.c \
+	prepare_source.c \
+	ranlxd.c \
+	ranlxs.c \
+	reweighting_factor.c \
+	reweighting_factor_nd.c \
+	rnd_gauge_trafo.c \
+	sighandler.c \
+	source_generation.c \
+	spinor_fft.c \
+	start.c \
+	temporalgauge.c \
+	update_backward_gauge.c \
+	update_gauge.c \
+	update_momenta.c \
+	update_tm.c
+
+AM_YFLAGS=-Ptmlqcd -i 
+lib_libtmLQCD_a_SOURCES+= \
+	read_input.l
+
+include buffers/Makefile.am
+include init/Makefile.am
+include io/Makefile.am
+include linalg/Makefile.am
+include meas/Makefile.am
+include monomial/Makefile.am
+include operator/Makefile.am
+include rational/Makefile.am
+include solver/Makefile.am
+include test/Makefile.am
+include xchange/Makefile.am
+include wrapper/Makefile.am
+
+if USE_SPI
+lib_libtmLQCD_a_SOURCES+= \
+	DirectPut.c
+endif
+
+if USE_QUDA
+lib_libtmLQCD_a_SOURCES+= \
+	quda_interface.c
+endif

buffers/Makefile.am

@@ -0,0 +1,11 @@
+lib_libtmLQCD_a_SOURCES+= \
+	%D%/gauge.c \
+	%D%/gauge_allocate_gauge_buffers.c \
+	%D%/gauge_finalize_gauge_buffers.c \
+	%D%/gauge_free_unused_gauge_buffers.c \
+	%D%/gauge_get_gauge_field.c \
+	%D%/gauge_get_gauge_field_array.c \
+	%D%/gauge_initialize_gauge_buffers.c \
+	%D%/gauge_return_gauge_field.c \
+	%D%/gauge_return_gauge_field_array.c \
+	%D%/utils_generic_exchange.c