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bplatz wants to merge 35 commits into from
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Add R2RML virtual graph support with advanced mapping features #1098

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adee19e
Add virtual graph support to nameservice
bplatz Jul 24, 2025
b963a39
Refactor virtual graph storage and fix critical bugs
bplatz Jul 26, 2025
8d8c66b
Remove FlatRank virtual graph support and refactor BM25 API
bplatz Jul 30, 2025
ff5edc0
Refactor nameservice storage for clarity and consistency
bplatz Jul 31, 2025
5d63bc7
Refactor virtual graph drop functionality and fix dependency bugs
bplatz Jul 31, 2025
dfb6507
cljfmt
bplatz Jul 31, 2025
7bd4c6a
remove temp file
bplatz Jul 31, 2025
f551068
Update main drop fn
bplatz Jul 31, 2025
713835f
Merge main into feature/ns-2
bplatz Aug 20, 2025
4a997a3
Fix storage protocol references after merge
bplatz Aug 20, 2025
138836a
stub r2rml
bplatz Aug 20, 2025
124229b
simple r2rml parse
bplatz Aug 20, 2025
1564153
more robust
bplatz Aug 20, 2025
5426234
Enhance R2RML support with aggregate functions and improved test cove…
bplatz Aug 21, 2025
e4928d1
tests pass
bplatz Aug 21, 2025
7a63ec5
Refactor R2RML handling to improve query execution and enhance integr…
bplatz Aug 21, 2025
3d1c9bc
Enable R2RML literal value filtering test to verify support for filte…
bplatz Aug 21, 2025
ecf2d9e
refactoring
bplatz Aug 22, 2025
0754620
Refactor R2RML processing to streamline subject and predicate binding…
bplatz Aug 22, 2025
5f26d2a
Add integration tests for R2RML context handling and IRI compaction
bplatz Aug 22, 2025
9fd1230
Refactor R2RML parsing to enhance template extraction and improve han…
bplatz Aug 22, 2025
454bb08
cljfmt
bplatz Aug 22, 2025
9a431a3
Enhance R2RML functionality by updating database creation method and …
bplatz Aug 22, 2025
d633049
Refactor R2RML parsing and enhance testing
bplatz Aug 23, 2025
c30648d
Add support for SQL queries in R2RML mappings and enhance integration…
bplatz Aug 23, 2025
30d2909
Enhance R2RML support by adding handling for constant values, XSD dat…
bplatz Aug 23, 2025
2f64650
Enhance R2RML support by adding language tag handling for literals; u…
bplatz Aug 23, 2025
6ff30e2
Merge feature/bm25-ns into feature/r2rml-vg
bplatz Sep 10, 2025
baf4214
Fix indentation in error handling for virtual graph loading
bplatz Sep 10, 2025
6e6e8f2
Add MySQL connector dependency and enhance R2RML logging for parsing …
bplatz Sep 10, 2025
7f3731a
Doc fix
bplatz Sep 10, 2025
ae75dec
Merge branch 'feature/bm25-ns' into feature/r2rml-vg
bplatz Sep 16, 2025
4537b87
Merge branch 'feature/bm25-ns' into feature/r2rml-vg
bplatz Dec 9, 2025
7c6d865
Merge feature/bm25-ns with lint fix into feature/r2rml-vg
bplatz Dec 9, 2025
9894231
Add conditional compilation for R2RML virtual graph check in nameservice
bplatz Dec 9, 2025
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15 changes: 11 additions & 4 deletions deps.edn
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Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,11 @@

;; AWS SDK v2 for S3 Express One Zone session management
;; Using minimal dependencies - only for CreateSession API
software.amazon.awssdk/s3 {:mvn/version "2.29.40"}}
software.amazon.awssdk/s3 {:mvn/version "2.29.40"}

;; r2rml
org.clojure/java.jdbc {:mvn/version "0.7.12"}
com.mysql/mysql-connector-j {:mvn/version "8.0.33"}}

:paths ["src" "resources" "target/classes"]

Expand All @@ -58,7 +62,8 @@
:extra-deps {org.clojure/tools.namespace {:mvn/version "1.5.0"}
criterium/criterium {:mvn/version "0.4.6"}
figwheel-sidecar/figwheel-sidecar {:mvn/version "0.5.20"}
thheller/shadow-cljs {:mvn/version "2.28.15"}}
thheller/shadow-cljs {:mvn/version "2.28.15"}
com.h2database/h2 {:mvn/version "2.2.224"}}
:jvm-opts ["-Dlogback.configurationFile=dev-resources/logback.xml"]}

:cljtest
Expand All @@ -69,7 +74,8 @@
babashka/fs {:mvn/version "0.5.20"}
clj-test-containers/clj-test-containers {:mvn/version "0.7.4"}
org.testcontainers/testcontainers {:mvn/version "1.19.3"}
org.testcontainers/localstack {:mvn/version "1.19.3"}}
org.testcontainers/localstack {:mvn/version "1.19.3"}
com.h2database/h2 {:mvn/version "2.2.224"}}
:exec-fn kaocha.runner/exec-fn
:exec-args {:kaocha.filter/skip-meta [:pending :docker]}}

Expand All @@ -82,7 +88,8 @@
babashka/fs {:mvn/version "0.5.20"}
clj-test-containers/clj-test-containers {:mvn/version "0.7.4"}
org.testcontainers/testcontainers {:mvn/version "1.19.3"}
org.testcontainers/localstack {:mvn/version "1.19.3"}}
org.testcontainers/localstack {:mvn/version "1.19.3"}
com.h2database/h2 {:mvn/version "2.2.224"}}
:exec-fn kaocha.runner/exec-fn
:exec-args {:kaocha.filter/focus-meta [:sci]}}

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