v1.0.1

Updated the vignette to use placeholder input file paths instead of the paths on my computer.

v1.0.0

• Setting version to 1.0.0 since it's not pre-release anymore.
• Updated README with info on environment setup and usage.
• Updated vignette with detailed instructions on environment setup.
• Changed file extension for printing trees to .pdf with argument to specify what is wanted.
• Added some code to identify which variants are most variant across specified populations of cells. I also put in code to call variants at just these locations across individual cells to speed up the process. Just a word of warning, this is still fairly slow and most of your cells will lack calls at many of these positions due to low coverage.

v0.7.1

Re-releasing due to bug with conda environment package version information

v0.6.0

Refactoring how I get data for the cells from the original bam files. Speeds things up dramatically and saves on resources.

v0.5.0

Finalizing package name change and fixing bootstrapping