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[WIP] config as PR for discussion#10

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[WIP] config as PR for discussion#10
daler wants to merge 1 commit into
masterfrom
config-strawman

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@daler

@daler daler commented May 21, 2016

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copied from #9 and converted into a separate branch so we can use github tools for discussing

Comment thread test/config.yaml
Author: Bob

# path like settings
data: /data/bob/original_data

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is this the path to fastqs? Or do indexes go here as well? I feel like this is too general of a setting, and that indexes, annotations, etc can just specify the full path. And maybe we can have a regexp for fastqs

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Agreed, the fastq regex can go into the controlling snake file

@daler daler mentioned this pull request May 21, 2016
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