SNAP

SNP annotation recovery tool

A python framework to read in VCF files and a given Genbank genome and parse out the genes the SNPs occur in, and what if any changes in translation occur.

Current Goals

• Goal 1: Read in genome from Genbank
• Goal 2: Find all CDS, and the sequence / translation.
• Goal 3: Find the position of each SNP in CDS.
• Goal 4: Build replace the SNP base and get new translation.
• Goal 5: Identify what changes in amino acids occur if any.

Credit

Lyndon Coghill
Felix Grewe