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Releases: mcvickerlab/GenVarLoader

0.21.2

17 Mar 17:33

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0.21.2 (2026-03-17)

Fix

  • repeated subset_to
  • bump genoray

[main b8cd5fe] bump: version 0.21.1 → 0.21.2
2 files changed, 8 insertions(+), 1 deletion(-)

0.21.1

09 Mar 16:45

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0.21.1 (2026-03-09)

Fix

  • bump genoray

[main 3f05c5a] bump: version 0.21.0 → 0.21.1
2 files changed, 7 insertions(+), 1 deletion(-)

0.21.0

26 Feb 01:25

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0.21.0 (2026-02-26)

Feat

  • add option to extend lengths or not for gvl.write() fix: contig normalization

Fix

  • add cli as optional dependency

[main b22275b] bump: version 0.20.0 → 0.21.0
2 files changed, 11 insertions(+), 1 deletion(-)

0.20.0

05 Feb 04:14

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0.20.0 (2026-02-05)

Feat

  • support python 3.13
  • upgrade to genoray 2

Fix

  • numba weirdness

[main 7df3090] bump: version 0.19.1 → 0.20.0
2 files changed, 12 insertions(+), 1 deletion(-)

0.19.1

20 Dec 18:55

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0.19.1 (2025-12-20)

Fix

  • perf: upgrade genoray for (much) faster writes. test: idempotent fixutres in test_ds_haps

[main e41f7f7] bump: version 0.19.0 → 0.19.1
2 files changed, 7 insertions(+), 1 deletion(-)

0.19.0

03 Dec 03:05

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0.19.0 (2025-12-03)

Feat

  • allow subsetting by region name. fix: convert eligible ak.Array to sp.rag.Ragged for gvl.RaggedVariants whenever possible

[main babe777] bump: version 0.18.3 → 0.19.0
2 files changed, 7 insertions(+), 1 deletion(-)

0.18.3

09 Nov 04:27

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0.18.3 (2025-11-09)

Fix

  • perf: faster reverse complementing

[main 0690647] bump: version 0.18.2 → 0.18.3
2 files changed, 7 insertions(+), 1 deletion(-)

0.18.2

03 Nov 04:28

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0.18.2 (2025-11-03)

Fix

  • correctly parse and load variant fields (skip duplicates)
  • use ak.str.length instead of ak.num to get ref and alt lengths. docs: shape docstring

[main c1900e9] bump: version 0.18.1 → 0.18.2
2 files changed, 8 insertions(+), 1 deletion(-)

0.18.1

23 Oct 06:21

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0.18.1 (2025-10-23)

Fix

  • track file format version

[main 877b6d4] bump: version 0.18.0 → 0.18.1
2 files changed, 7 insertions(+), 1 deletion(-)

0.18.0

22 Oct 05:19

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0.18.0 (2025-10-22)

Feat

  • make RaggedVariants an Awkward Array subclass supporting arbitrary additional fields.

[main 27420c0] bump: version 0.17.0 → 0.18.0
2 files changed, 7 insertions(+), 1 deletion(-)