feat: update nf-core modules and pipeline configs#93
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Update nf-core modules across all 4 pipelines (nf-atacseq, nf-rnaseq, nf-outrider, nf-scatac). Add test_local.config profiles and update nextflow.config for each pipeline. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Summary
test_local.configprofiles for local testingnextflow.configfor each pipelineTest plan
nextflow run pipelines/nf-atacseq -profile test_localpassesnextflow config🤖 Generated with Claude Code