Bioinformatics Java Toolkit/ .jar

Features

GC content calculation(%) Reverse complement k-mer generation ( k = 3) Mofit ORF Open Reading Frame

Project Strcture

dna_sequence.java is the Main program, read input files and run analysis GC_count.java Calculate GC in % Reverse_complement.java It creates reverse complement of DNA sequence Kmer.java This creates k-mers (3) from sequence ORF it counts open reading frame

Input

This program accpts FASTA format file

...

sequence1 ACTGATGC ...

How to run

Compile: javac bioinformatics/*.java

Run: java dna_sequence file.fasta

Output

It generates: GC percentage, Reverse complement, k-mers(3), ORF, Motif

Project structure

Bioinformatics tools using java/
├── dna_sequence.java
├── GC_content.java 
├── Kmer.java 
└── README.md            # Documentation