RNA workflow#500

Draft

dennishendriksen wants to merge 16 commits intomainfrom

feat/rna_workflow

Commits on Aug 3, 2023

created a subworkflow for rna bam files, added data input and conversion
RienkHeins
committed

Commits on Aug 9, 2023

Commits on Sep 5, 2023

fixed rna variable and added featureCounts and outrider processes
RienkHeins
committed

Commits on Sep 8, 2023

updated featureCounts processes, now converting to count matrix for each sample
RienkHeins
committed

Commits on Sep 13, 2023

completed featureCounts workflow and scripts
RienkHeins
committed

Commits on Sep 19, 2023

outrider implemented, fixed count matrix merge out of memory issue for larger datasets
RienkHeins
committed

Commits on Sep 25, 2023

updated featurecounts, removed output error outrider, updated rna result process
RienkHeins
committed

Commits on Sep 28, 2023

Added gene name conversion from ensemble gene to gene ID, updated process resource management, added groovy functions
RienkHeins
committed

Commits on Sep 29, 2023

added text file containing code created for project
RienkHeins
committed