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This was referenced Feb 11, 2020
stevekm
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Feb 11, 2020
| job_metadata['assay'] = assay | ||
| job_metadata['request_id'] = project_id | ||
| job_metadata['tumor'] = {} | ||
| job_metadata['tumor']['igo_id'] = tumor['igo_id'] |
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@allanbolipata @sivkovic which identifier are we using inside the Roslin pipelines? IGO ID or Patient ID or some other ID?
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Once the inclusion of output metadata in the operator is complete, we will have to make sure to check against any unintended side effects in the behavior of the operators and job submission, etc.. Need some integration testing. |
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note: @nikhil is planning updates to Roslin CWL output schema, changes might need to be included here |
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Changes made here in order to pass metadata out of the Roslin operator and set the
output_metadatafield for the job serializer in order to use the output metadata downstream in other operators