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identical agilent v3 and v4 resources

Status: Open.

#345 In mskcc/roslin-variant;

· anoronh4 opened on May 27, 2021

roslin_request_to_yaml.py bad glob

Status: Open.

#322 In mskcc/roslin-variant;

· timosong opened on Sep 20, 2019

Run MSIsensor and add result into data_clinical

Status: Open.

#316 In mskcc/roslin-variant;

· ckandoth opened on Sep 6, 2019

Calculate and add TMB into data_clinical file

Status: Open.

#315 In mskcc/roslin-variant;

· ckandoth opened on Sep 6, 2019

Retroactively fix clinical data columns for cBioPortal

Status: Open.

#271 In mskcc/roslin-variant;

· ckandoth opened on Jul 22, 2019

Add more sample-level information for display in cBioPortal

Status: Open.

#270 In mskcc/roslin-variant;

· ckandoth opened on Jul 22, 2019

Optimize Abra parameters for somatic calling

Status: Open.

#263 In mskcc/roslin-variant;

· ckandoth opened on Jun 16, 2019

Quantify drawbacks of limiting Abra to coding regions

Status: Open.

#231 In mskcc/roslin-variant;

· ckandoth opened on May 31, 2019