Repositories list

• context-review

  Public
  HTML

  •

  Creative Commons Attribution 4.0 International

  •1414 forks•1313 stars•00 issues•00 pull requests•Updated May 22, 2026May 22, 2026

• fm-survey

  Public
  Foundation Models for Biomedical Data: Architectures, Adaptation, and Opportunities for Scientific Discovery

  HTML

  •

  Creative Commons Attribution 4.0 International

  •55 forks•00 stars•00 issues•11 pull request•Updated May 4, 2026May 4, 2026

• website

  Public
  Our website

  HTML

  •

  MIT License

  •66 forks•11 star•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• Contextualized

  Public
  An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters.

  machine-learningbioinformaticsstatistics+ 1

  machine-learningbioinformaticsstatisticsmedical-informatics

  Python

  •

  GNU General Public License v3.0

  •1313 forks•7777 stars•3535 issues•44 pull requests•Updated Mar 6, 2026Mar 6, 2026

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 13, 2026Jan 13, 2026

• dgm-fall-2025

  Public
  JavaScript

  •

  MIT License

  •5656 forks•00 stars•00 issues•00 pull requests•Updated Dec 17, 2025Dec 17, 2025

• ReadingList

  Public
  Our reading list

  11 fork•22 stars•00 issues•00 pull requests•Updated Oct 4, 2025Oct 4, 2025

• pgm-spring-2025

  Public
  Course webpage for PGMs, Spring 2025

  modelsgraphicalprobabilistic

  modelsgraphicalprobabilistic

  TeX

  •

  MIT License

  •103103 forks•11 star•00 issues•11 pull request•Updated Jun 6, 2025Jun 6, 2025

• easy-gpt

  Public
  A teaching introduction to GPT

  Python

  •11 fork•22 stars•00 issues•00 pull requests•Updated Apr 15, 2025Apr 15, 2025

• ConferenceCountdown

  Public
  Webpage used to countdown time until ML/Compbio conference deadlines

  JavaScript

  •

  MIT License

  •00 forks•66 stars•00 issues•00 pull requests•Updated Jan 14, 2025Jan 14, 2025

• clehrity

  Public
  Automatically finding surprises in EHRs

  Python

  •

  MIT License

  •00 forks•88 stars•00 issues•1919 pull requests•Updated Aug 21, 2024Aug 21, 2024

• website_utils

  Public
  Utilities for making a website

  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 13, 2024Jun 13, 2024

• CompBioDatasetsForMachineLearning

  Public
  A Curated List of Computational Biology Datasets Suitable for Machine Learning

  machine-learningcomputational-biologydataset+ 4

  machine-learningcomputational-biologydatasetcurated-listdatasetsbiomedical-data-sciencecomputational-biology-datasets

  2626 forks•199199 stars•00 issues•00 pull requests•Updated Apr 19, 2024Apr 19, 2024

• ebm_utils

  Public
  Utilities for Explainable Boosting Machines

  Python

  •

  MIT License

  •22 forks•33 stars•11 issue•00 pull requests•Updated Nov 30, 2023Nov 30, 2023

• ClinicalMLZoo

  Public
  A zoo of publicly available ML models for clinical tasks.

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 20, 2023Sep 20, 2023

• DeathByRoundNumbers

  Public
  Glass-box ML reveals biases in medical practice at round number thresholds

  ehrinterpretable-machine-learning

  ehrinterpretable-machine-learning

  Jupyter Notebook

  •

  MIT License

  •11 fork•33 stars•00 issues•00 pull requests•Updated Feb 23, 2023Feb 23, 2023

• gam_purification

  Public
  Utilities for Purifying Generalized Additive Models

  Python

  •

  MIT License

  •11 fork•33 stars•11 issue•00 pull requests•Updated Nov 5, 2022Nov 5, 2022

• Dropout_Interactions

  Public
  Code for "Dropout as a Regularizer of Interaction Effects"

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 23, 2022Apr 23, 2022

• GO_Translator

  Public
  Simple utility functions for handling GO Terms in Python.

  gene-ontology

  gene-ontology

  Python

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jul 7, 2019Jul 7, 2019