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    19 repositories

    • minimal-ptsd-model

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • ComparativeAgingV3

      Public
      This is the accompanying git repository for the paper "A damage accumulation model reveals strategies of aging across species" DOI (add)
      HTML
      •0•0•0•0•Updated Feb 10, 2026Feb 10, 2026

    • PregAging

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • yoglen

      Public
      The YoGlen latent variable ("deconvolution") algorithm for estimating unknown age of menopause
      HTML
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • lifespan-heritability-analysis

      Public
      This repository accompanies the paper: "Heritability of intrinsic human lifespan is about 50% when confounding factors are addressed"
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Oct 2, 2025Oct 2, 2025

    • hpa-dysregulation-ptsd

      Public
      Mechanistic model of HPA axis dysregulation in PTSD using gland-mass adaptation dynamics. Includes simulations of steady-state hormone levels, TSST response, an…
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 23, 2025Jun 23, 2025

    • Comparative-aging

      Public
      This git folder contains code and supplementary information for the paper "A damage accumulation model reveals strategies of aging across species"
      HTML
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • HPA_model_simulter

      Public
      A Streamlit app simulating the Hypothalamic-Pituitary-Adrenal (HPA) axis using stochastic differential equations.
      Python
      •
      MIT License
      •0•1•0•0•Updated May 16, 2025May 16, 2025

    • damage-growth-sim

      Public
      Python
      •0•0•0•0•Updated Mar 24, 2025Mar 24, 2025

    • -Cold-and-hot-fibrosis-define-clinically-distinct-cardiac-pathologies-

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 25, 2024Dec 25, 2024

    • LHPAI

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

    • PregnancyMillions

      Public
      Data and analyses for the paper "Pregnancy and postpartum dynamics revealed by millions of lab tests"
      Jupyter Notebook
      •
      MIT License
      •1•5•0•0•Updated Nov 21, 2024Nov 21, 2024

    • Immune-checkpoint-keeps-senescent-cells-alive

      Public
      Mathematica
      •0•0•0•0•Updated Dec 27, 2023Dec 27, 2023

    • Controls-for-phylogeny-and-robust-analysis-in-ParTI

      Public
      Mathematica
      •0•0•0•0•Updated Nov 3, 2021Nov 3, 2021

    • ParTI

      Public
      A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.
      C
      •9•15•0•0•Updated Jan 21, 2020Jan 21, 2020

    • fibrosis-cell-circuit

      Public
      Simulations of the myofibroblast-macrophage circuit for tissue repair and fibrosis
      Mathematica
      •0•1•0•0•Updated Jan 3, 2020Jan 3, 2020

    • OTP

      Public
      Mathematica code of simulations based on theory for optimal total performance of tissues in the presence of multiple tasks and spatial gradients
      Mathematica
      •0•0•0•0•Updated Dec 10, 2018Dec 10, 2018

    • FCD

      Public
      Mathematica
      •0•0•0•0•Updated Dec 7, 2016Dec 7, 2016

    • bandicoot

      Public
      an open-source python toolbox to analyze mobile phone metadata
      JavaScript
      •
      MIT License
      •62•0•0•0•Updated Aug 17, 2016Aug 17, 2016
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