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@DeepFoldProtein DeepFold Research Team

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    22 repositories

    • MSA_FLOW

      Public
      Python
      •0•0•0•0•Updated May 1, 2026May 1, 2026

    • plmMSA

      Public
      PLM-based MSA server. Rebase of DeepFoldProtein/PLMAlign.
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • patchr

      Public
      Structure inpainting and simulation-ready setup for proteins, DNA, RNA, and complexes
      Python
      •
      MIT License
      •1•8•0•0•Updated Apr 14, 2026Apr 14, 2026

    • ProteinTTT

      Public
      One protein is all you need (ICLR 2026)
      Jupyter Notebook
      •
      MIT License
      •15•0•0•0•Updated Apr 6, 2026Apr 6, 2026

    • OTalign

      Public
      OTalign: Protein sequence alignment for remote homologs using Protein Language Models and Unbalanced Optimal Transport.
      bioinformaticsdeep-learningcomputational-biology
      bioinformaticsdeep-learningcomputational-biologyoptimal-transportprotein-alignmentremote-homology-detectionprotein-language-models
      Python
      •0•4•0•0•Updated Mar 9, 2026Mar 9, 2026

    • pLM-BLAST

      Public
      Detection of remote homology by comparison of protein language model representations
      Python
      •
      MIT License
      •8•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • EBA

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • dedal-fork

      Public
      Python
      •0•0•0•0•Updated Feb 27, 2026Feb 27, 2026

    • proposals

      Public
      Python
      •0•0•0•0•Updated Feb 6, 2026Feb 6, 2026

    • Protenix-MPS

      Public
      A trainable PyTorch reproduction of AlphaFold 3. (MPS version)
      Python
      •
      Apache License 2.0
      •267•0•0•0•Updated Jan 10, 2026Jan 10, 2026

    • recent-pdb

      Public
      Recent Protein Data Bank Entries
      Python
      •0•0•0•0•Updated Jan 7, 2026Jan 7, 2026

    • DeepFold-PLM

      Public
      DeepFold-PLM
      Python
      •
      MIT License
      •0•11•0•0•Updated Nov 14, 2025Nov 14, 2025

    • cpm_kernels

      Public
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • Pymol-Plugins

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

    • python-template

      Public template
      Python template repository
      Makefile
      •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

    • af3-input

      Public
      AlphaFold 3 Input Generation with MMseqs2 and plmMSA
      Python
      •1•2•0•0•Updated Jun 12, 2025Jun 12, 2025

    • DeepFold

      Public
      Framework for project DeepFold.
      protein-protein-interactionprotein-foldingprotein-structure-prediction
      protein-protein-interactionprotein-foldingprotein-structure-prediction
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Jun 9, 2025Jun 9, 2025

    • deepfold_v1

      Public
      Protein 3D Structure Prediction with DeepFold
      C
      •
      Apache License 2.0
      •3•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • iitp-showcase

      Public
      Showcase
      Python
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • trident

      Public
      A performance library for machine learning applications.
      Python
      •
      Apache License 2.0
      •14•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • .github

      Public
      Special repository for the organization's profile.
      0•0•0•0•Updated Aug 25, 2023Aug 25, 2023

    • DeepFold_DB_docs

      Public
      HTML
      •0•0•0•0•Updated Aug 22, 2023Aug 22, 2023
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