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    14 repositories

    • gvclass

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•17•0•0•Updated Apr 21, 2026Apr 21, 2026

    • sgtree

      Public
      Simple Genome Tree (SGTree)
      phylogenomics
      phylogenomics
      Python
      •0•0•0•0•Updated Apr 21, 2026Apr 21, 2026

    • ssuextract

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Mar 26, 2026Mar 26, 2026

    • symclatron

      Public
      symbiont classifier
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•9•0•0•Updated Mar 12, 2026Mar 12, 2026

    • nelli-ai-scientist

      Public
      Python
      •1•1•0•0•Updated Mar 11, 2026Mar 11, 2026

    • moducomp

      Public
      Metabolic module completeness of genomes and metabolic complementarity in microbiomes
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Feb 6, 2026Feb 6, 2026

    • symcla

      Public archive
      symcla: symbiont classifier
      Python
      •
      GNU General Public License v3.0
      •2•5•1•0•Updated Dec 29, 2025Dec 29, 2025

    • nngenetree

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Dec 17, 2025Dec 17, 2025

    • nelli-getting-started

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • nelli-ocode

      Public
      AI coding agent, built for the terminal.
      TypeScript
      •
      MIT License
      •17k•0•0•0•Updated Sep 28, 2025Sep 28, 2025

    • nsgtree

      Public
      Python
      •
      GNU General Public License v2.0
      •1•4•0•0•Updated Aug 26, 2025Aug 26, 2025

    • readsim

      Public
      Shell
      •0•0•0•0•Updated May 5, 2025May 5, 2025

    • pdmclust

      Public
      Python
      •0•2•0•0•Updated May 3, 2025May 3, 2025

    • djcollection

      Public
      Supporting data for Jones et al. 2023
      MIT License
      •0•0•0•0•Updated Jul 17, 2023Jul 17, 2023
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