Bump the all-julia-packages group with 7 updates

[dependabot]

Updates the requirements on RvSpectMLBase, Interpolations, Optim, SPICE, PyCall, PyPlot and EchelleInstruments to permit the latest version.
Updates RvSpectMLBase to 0.2.4

Release notes

Sourced from RvSpectMLBase's releases.

v.0.2.4

What's Changed

• bump compats (including julia), remove unneeded Interpolations.jl dep by @​palumbom in RvSpectML/RvSpectMLBase.jl#23

New Contributors

• @​palumbom made their first contribution in RvSpectML/RvSpectMLBase.jl#23

Full Changelog: RvSpectML/RvSpectMLBase.jl@v0.2.3...v0.2.4

Commits

• c5c96ff c bump
• 5e6611d Merge pull request #23 from palumbom/main
• a57f918 Remove commented code in internals.md
• 581cd44 update CI julia test version, comment out LinearInterp docs for module that d...
• a958104 bump compats (including julia), remove unneeded Interpolations.jl dep
• 9e58410 Update Project.toml
• f5ca8d1 Merge pull request #19 from christiangil/main: add Spectra2DExtended struct
• 2aa8916 Merge branch 'main' of https://github.com/christiangil/RvSpectMLBase.jl
• a25cf0f Merge pull request #18 from RvSpectML/compathelper/new_version/2022-07-12-01-...
• 19d441c CompatHelper: bump compat for Interpolations to 0.14, (keep existing compat)
• Additional commits viewable in compare view

Updates Interpolations to 0.16.2

Release notes

Sourced from Interpolations's releases.

v0.16.2

Interpolations v0.16.2

Diff since v0.16.1

Merged pull requests:

• Remove Requires and branches for unsupported VERSIONs (#632) (@​devmotion)

Closed issues:

• Multidimensional arrays of N>2 (#629)

Changelog

Sourced from Interpolations's changelog.

For a comprehensive list of changes, see Releases.

v0.16.1

Fixes:

• Fix hessian with ForwardDiff.jl for scaled interpolants (#628)

v0.16

Breaking changes:

• getindex for AbstractInterpolations only accepts integers (#579), deprecated since (#226)
• gradient and hessian are once again no longer exported (#623)
• Fix free boundary condition on Cubic (#616)
• Compatible with Julia versions 1.9 and later

v0.15

Breaking changes:

• Compatible with Julia versions 1.6 and later

v0.14.0

Breaking changes:

Implement inplace GriddedInterpolation (#496, for #495)

• interpolate now copies the coefficients for GriddedInterpolation.
• interpolate! now does not copy the coefficients for GriddedInterpolation.
• The third argument of GriddedInterpolation describes the array type of the coefficients rather than the element type of Array.

v0.9.0

Breaking changes:

• gradient and hessian are no longer exported; use Interpolations.gradient and Interpolations.hessian.
• interpolate objects now check bounds, and throw an error if you try to evaluate them at locations beyond the edge of their interpolation domain; use extrapolate if you need out-of-bounds evaluation
• For quadratic and cubic interpolation, interpolate! now returns an object whose axes are narrowed by the amount of padding needed on the array edges. This preserves correspondence between input indices and output indices. See https://julialang.org/blog/2017/04/offset-arrays for more information.
• The parametrization of some types has changed; this does not affect users of the "exported" interface, but does break packages that performed manual construction of explicit types.

Changes with deprecation warnings:

• itp[i...] should be replaced with itp(i...).
• OnGrid and OnCell should now be placed inside the boundary condition (e.g., Flat(OnGrid())), and should only be used for quadratic and cubic interpolation.
• the extrapolation boundary condition Linear was changed to Line, to be consistent

... (truncated)

Commits

• 4d35396 Remove Requires and branches for unsupported VERSIONs (#632)
• 078a1b1 make hessians of scaled interpolants work (#628)
• ba5b9ec Merge pull request #626 from mkitti/mkitti-update-news-0-16-0
• e376ff9 Update news
• 3d0236e Merge pull request #625 from mkitti/mkitti-ci-pre
• ed3ccf8 Merge pull request #624 from mkitti/mkitti-update-documenter-jl-gha
• 4544295 Update CI to test lts, 1, pre, and nightly
• ac264b6 Update Github Actiosn for Documenter.jl
• 06b779c Unexport gradient, hessian (#623)
• cba98e8 Merge pull request #621 from mkitti/mkitti-citations-cff-1-2-0
• Additional commits viewable in compare view

Updates Optim to 2.0.1

Release notes

Sourced from Optim's releases.

v2.0.1

Optim v2.0.1

Diff since v2.0.0

Merged pull requests:

• Re-instate old behavior for Fminbox in terms of convergence calculati… (#1232) (@​pkofod)

Closed issues:

• Default options in Optim.jl v2.0 don't seem appropriate (#1228)
• value_gradient! returns the wrong thing for ManifoldObjective in v1.9.4 (#1229)

Changelog

Sourced from Optim's changelog.

Optim master release notes

• Fix Preconditioning example for v1.0 syntax
• Improve handling of alternative number types in univariate optimization
• Add conditional likelihood example to docs
• Improve Fminbox trace printing.

Optim v0.17.2 release notes

• Fix some typos
• Fix doc building

Optim v0.17.0 release notes

• Drop support for Julia versions less 1.0. Optim v.17.1 is also out.

Optim v0.11.0 release notes

• Optional scaling for inverse Hessian in L-BFGS
• Support for initial step length guesses via LineSearches

Optim v0.10.0 release notes

• Support for optimization on Riemannian manifolds
• Support for optimization of functions of complex variables
• New experimental KrylovTrustRegion method useful when cheap Hessian-vector products are available.
• Improved support for BigFloats
• Add doc strings to methods
• Drop support for Julia versions less than v0.6.0-pre

Optim v0.9.0 release notes

• Fminbox: If an initial guess is on the boundary of the box, the guess is moved inside the box and a warning is produced, as opposed to crashing with an error.
• Significant changes to the Non-, Once-, and TwiceDifferentiable setup; these now hold temporaries relevant to the evaluation of objectives, gradients, and Hessians. They also hold f-, g-, and h_calls counters.
• Refactor tests
• Drop v0.4 support
• Add limits to f-, g-, and h_calls
• Improve trace for univariate optimization
• Changed order of storage arrays and evaluation point arrays in gradient and Hessian calls
• Skip v0.8.0 to allow fixes on Julia v0.5.0

Optim v0.7.6 release notes

• Fix deprecations for *Function constructors
• Fix depwarns on Julia master (v0.6)
• Update references to new JuliaNLSolvers home for Optim+family

Optim v0.7.5 release notes

• Various bug fixes
• Deprecate DifferentiableFunction, TwiceDifferentiable in favor of OnceDifferentiable, TwiceDifferentiable
• widen some type annotations (e.g. allow for multidimensional arrays as inputs again)
• introduce allow_f_increases keyword in Optim.Options to allow objective to increase between iterations
• New option in Optim.Options: allow_f_increases. Defaults to false, but if set to true, the solver will not stop even if a step leads to an increase in the objective.
• Newton and BFGS: set initial step length to one. See 328.

Optim v0.7.3 release notes

... (truncated)

Commits

• 4bcd6a6 Update Project.toml
• 9b664c2 Re-instate old behavior for Fminbox in terms of convergence calculation and c...
• d0f5e0e Update Project.toml
• 286aeed Compute JVP in line searches (#1210)
• d3ccb73 CompatHelper: bump compat for JET in [extras] to 0.11, (keep existing compat)...
• 9483bd8 Document optimization state and callback functionality. Change initia… (#1226)
• 7934f7b Pass optimization state to callbacks (#1224)
• 540c97b Depend on Statistics instead of StatsBase (#1221)
• bc25e2c Fix bounds errors in default x_abschange and x_relchange (#1222)
• 3e3d33e As default use a minimum trust region radius of 0 (#1219)
• Additional commits viewable in compare view

Updates SPICE to 0.2.5

Release notes

Sourced from SPICE's releases.

v0.2.5

SPICE v0.2.5

Diff since v0.2.4

Merged pull requests:

• Canonize (#33) (@​icweaver)
• Bump actions/checkout from 4 to 5 (#34) (@​dependabot[bot])
• Convert @ref links to @extref links in docstrings (#36) (@​abhro)
• Bump version 0.2.5 (#37) (@​abhro)

Closed issues:

• Combine with EphemerisSources.jl? (#32)
• SPICE/SPKにおける状態ベクトル補間・SSB基準の数式と仕様をドキュメント化したい (#35)

Commits

• f4e4831 Bump version 0.2.5
• ddf9589 Convert @ref links to @extref links in docstrings
• a76b9b5 Bump actions/checkout from 4 to 5 (#34)
• dc6a72d Merge pull request #33 from JuliaAstro/icweaver-canonize
• 5a64b46 updated links
• 643a612 Bump version 0.2.4 in Project.toml
• 8b128a2 Fix bug in dsphdr
• 1dda34b Update recommended code for deprecated functions
• b3e426f Use simpler markdown for URL links
• 15c208a Add ref links in docstrings
• Additional commits viewable in compare view

Updates PyCall to 1.96.4

Release notes

Sourced from PyCall's releases.

v1.96.4

PyCall v1.96.4

Diff since v1.96.3

Merged pull requests:

• Rename distutils.sysconfig to sysconfig (#1068) (@​MilesCranmer)
• bump to 1.96.4 (#1070) (@​stevengj)

Commits

• e54c4ee bump to 1.96.4 (#1070)
• 790e62f Rename distutils.sysconfig to sysconfig (#1068)
• d407513 bump to 1.96.3
• 9decc34 Fix the stdlib compat entries (#1065)
• 3df5c48 version stdlibs (#1063)
• 69f9157 new release (#1062)
• 04c4778 A few fixes for julia master (#1059)
• 2a9f077 fix depwarn (#1042)
• 0b30000 Fix typo (#1032)
• c12d6d7 disable deepcopy on PyObject #757 (#1039)
• Additional commits viewable in compare view

Updates PyPlot to 2.11.6

Release notes

Sourced from PyPlot's releases.

v2.11.6

PyPlot v2.11.6

Diff since v2.11.5

Merged pull requests:

• put reading the __version__ from the pyplot package in try catch since it can fail (#594) (@​KristofferC)
• Please release a new version containing the Colors.jl compat bump (#598) (@​Octogonapus)

Closed issues:

• PyCall and PyPlot are crashing in Julia 1.10 (#580)

Commits

• 3c658d8 Patch bump (#598)
• 343cec5 bump for colors 0.13
• 2525681 put reading the __version__ from the pyplot package in try catch since it c...
• 00119f8 Update Project.toml: 2.11.5
• efbead9 Update deprecated methods (#590)
• cb34a10 Update Project.toml: bump to 2.11.4
• c229e30 check for matplotlibs.colormaps before matplotlibs.colormaps.register (#592)
• 28826e0 bump version to 2.11.3
• 407a75f Merge pull request #587 from JuliaPy/dependabot/github_actions/codecov/codeco...
• bd8c81a Merge pull request #588 from JuliaPy/dependabot/github_actions/julia-actions/...
• Additional commits viewable in compare view

Updates EchelleInstruments to 0.2.11

Release notes

Sourced from EchelleInstruments's releases.

v0.2.11

EchelleInstruments v0.2.11

Diff since v0.2.10

• Updates for NEID DRP v1.3
• Compat updates

Commits

• 08747b9 fixing for documneter
• 12caf8c update Polynomials compat
• 6d1c55e v bump
• d85d7db update for NEID DRP v1.3
• a8706f3 v bump, update compat
• 524a4db add NEID DQ?LEVEL flags to metadata imported from manifest for DRP v1.2
• 32d3953 fix to work with updated DataFrames
• 1ae3ad2 typeo, v bump
• 2de2860 fix typeo
• 349eb69 add calc rms of NEID's expmeter color bins
• Additional commits viewable in compare view

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