GitHub - pedros/dzlab-tools: Mirror of Daniel Zilberman Lab's bioinformatics tools

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 704 Commits
DZLab-Tools		DZLab-Tools
System-Wrapper @ eb9adf3		System-Wrapper @ eb9adf3
doc		doc
lib		lib
t		t
.gitignore		.gitignore
.gitmodules		.gitmodules
_build.sh		_build.sh
assemble_from_agp.pl		assemble_from_agp.pl
assemble_genes_from_annotation.pl		assemble_genes_from_annotation.pl
average-partitions.pl		average-partitions.pl
average_ends.pl		average_ends.pl
average_ends_new.pl		average_ends_new.pl
average_gff.pl		average_gff.pl
b2r.pl		b2r.pl
bs-seq.pl		bs-seq.pl
build_gff_score_table.pl		build_gff_score_table.pl
c2t.pl		c2t.pl
cat_and_window.pl		cat_and_window.pl
cat_and_window.sh		cat_and_window.sh
check_methyl.pl		check_methyl.pl
check_single-c.pl		check_single-c.pl
chi2gff.pl		chi2gff.pl
cmp_gff.pl		cmp_gff.pl
collapse_exons.pl		collapse_exons.pl
collapse_gff.pl		collapse_gff.pl
collect_align_stats.pl		collect_align_stats.pl
combine-nuc-freqs.pl		combine-nuc-freqs.pl
compile_gff.pl		compile_gff.pl
concat_fasta.pl		concat_fasta.pl
convert.pl		convert.pl
correlatePairedEnds.pl		correlatePairedEnds.pl
countMethylation.pl		countMethylation.pl
count_adjacencies.pl		count_adjacencies.pl
count_c_in_bulk.pl		count_c_in_bulk.pl
count_c_in_reads.pl		count_c_in_reads.pl
count_cases.pl		count_cases.pl
cross_match_to_gff.pl		cross_match_to_gff.pl
dz_seqret.pl		dz_seqret.pl
dzlab-check.pl		dzlab-check.pl
dzlab-update.pl		dzlab-update.pl
eland2gff.pl		eland2gff.pl
eland3_to_gff.pl		eland3_to_gff.pl
ends_analysis.pl		ends_analysis.pl
ends_analysis.sh		ends_analysis.sh
ensure_all_genes_present.pl		ensure_all_genes_present.pl
exon_count.pl		exon_count.pl
exon_filter.pl		exon_filter.pl
expand_gff.pl		expand_gff.pl
extract_column_gff.pl		extract_column_gff.pl
extract_sequences.pl		extract_sequences.pl
fasta_bsrc.pl		fasta_bsrc.pl
fasta_motifs.pl		fasta_motifs.pl
fasta_normalize.pl		fasta_normalize.pl
fastq_trim.pl		fastq_trim.pl
filter_by_coord.pl		filter_by_coord.pl
filter_ends.pl		filter_ends.pl
filter_gff.pl		filter_gff.pl
filter_reads_by_coord.pl		filter_reads_by_coord.pl
filter_repeats.pl		filter_repeats.pl
find_loci.pl		find_loci.pl
fisher_exact_test.pl		fisher_exact_test.pl
fq_all2std.pl		fq_all2std.pl
freq.sh		freq.sh
full_run.sh		full_run.sh
g2a.pl		g2a.pl
genome_diff.pl		genome_diff.pl
genome_patch.pl		genome_patch.pl
get_parse_JGI.pl		get_parse_JGI.pl
gff2eland.pl		gff2eland.pl
gff2eland3.pl		gff2eland3.pl
gff2tsv.pl		gff2tsv.pl
gff_to_soft.pl		gff_to_soft.pl
installer.nsi		installer.nsi
intersect_lists.pl		intersect_lists.pl
make_intron_gff.pl		make_intron_gff.pl
merge_freq.pl		merge_freq.pl
merge_gff.pl		merge_gff.pl
merge_sam.pl		merge_sam.pl
merge_scaffs.pl		merge_scaffs.pl
mutateSeq.pl		mutateSeq.pl
normalize.pl		normalize.pl
normalize_gff.pl		normalize_gff.pl
nucleotide-freqs.pl		nucleotide-freqs.pl
offset_coordinates.pl		offset_coordinates.pl
overlaps_gff.pl		overlaps_gff.pl
parent_imprinting.pl		parent_imprinting.pl
parse_bowtie.pl		parse_bowtie.pl
parse_c_files.pl		parse_c_files.pl
parse_ecker.pl		parse_ecker.pl
parse_eland.pl		parse_eland.pl
parse_fasta.pl		parse_fasta.pl
parse_silkwork_gen.pl		parse_silkwork_gen.pl
partitioner.pl		partitioner.pl
plot_kde.pl		plot_kde.pl
qseq2fastq.pl		qseq2fastq.pl
qseq2fq.pl		qseq2fq.pl
ratio.pl		ratio.pl
rcfas.pl		rcfas.pl
rename_feature.pl		rename_feature.pl